View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_15 (Length: 407)
Name: NF7523_low_15
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 7221090 - 7220706
Alignment:
| Q |
1 |
atatggagtgactatctaatatttggatggtaattaaacagatggattacatattaggaaaaaatcctgaaggaagatcatatatggtaggatttgggaa |
100 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7221090 |
atatagagtgactatctaatatttggatggtaa----acagatggattacatattaggaaaaaatcctgaaggaagatcatatatggtaggttttgggaa |
7220995 |
T |
|
| Q |
101 |
aaatccaccaacacaagctcaccatagaggtgcttcagtgccaaatttgtcaccaaatgaagagataaactgtcccacaagctttaagaaatggctagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7220994 |
aaatccaccaacacaagctcaccatagaggtgcttcagtgccaaatttgtcaccaaacgaagagataaactgtcccacaagctttaagaaatggctagaa |
7220895 |
T |
|
| Q |
201 |
agagatgcaccaaatccacacgagctaactggggccattgttggtggacctgacatcaacgacaagttcaatgataaacgtacagattcgcctaagacgg |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7220894 |
agagatgcaccaaatccacatgagctaactggggccattgttggtggacctgacatcaacgacaagttcaatgataaacgtacagattcacctaagacgg |
7220795 |
T |
|
| Q |
301 |
aaccttgcacatatgttaattcccttgcagccggtgttctagcaaagcttgcttctttgggttaacttagcttaatttcatgttagtgt |
389 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7220794 |
aaccttgcacatatgttaattcccttgcagtcggtgttctagcaaagcttgcttctttgggttaacttagcttaatttcatgttggtgt |
7220706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 37 - 385
Target Start/End: Complemental strand, 48525560 - 48525212
Alignment:
| Q |
37 |
aacagatggattacatattaggaaaaaatcctgaaggaagatcatatatggtaggatttgggaaaaatccaccaacacaagctcaccatagaggtgcttc |
136 |
Q |
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| T |
48525560 |
aacagatggattacatattggggaaaaacccagaaggaagatcatacatggtaggattcgggaaaaatccacccacacaagctcaccatagaggtgcttc |
48525461 |
T |
|
| Q |
137 |
agtgccaaatttgtcaccaaatgaagagataaactgtcccacaagctttaagaaatggctagaaagagatgcaccaaatccacacgagctaactggggcc |
236 |
Q |
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||||||||| ||||||||||| ||||| ||||| ||||| | |||||| ||| ||||| ||||||||| |||||||||||| ||||||||||| || |
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| T |
48525460 |
agtgccaaagttgtcaccaaacgaagatataaattgtcctatgagcttttcgaagtggctgaaaagagatggaccaaatccacatgagctaactggagct |
48525361 |
T |
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| Q |
237 |
attgttggtggacctgacatcaacgacaagttcaatgataaacgtacagattcgcctaagacggaaccttgcacatatgttaattcccttgcagccggtg |
336 |
Q |
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| T |
48525360 |
attgtaggtggacctgacatcaatgacaaattcgatgataatcgtacagattcacctaagactgaaccttgcacatatgttaattctcttgcagctggtg |
48525261 |
T |
|
| Q |
337 |
ttctagcaaagcttgcttctttgggttaacttagcttaatttcatgtta |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
48525260 |
ctctagcaaagcttgcttctttgggttaacttagcttaatgtcacgtta |
48525212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 35 - 175
Target Start/End: Original strand, 50308082 - 50308222
Alignment:
| Q |
35 |
taaacagatggattacatattaggaaaaaatcctgaaggaagatcatatatggtaggatttgggaaaaatccaccaacacaagctcaccatagaggtgct |
134 |
Q |
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|||| ||||| |||||||||| || |||||| | ||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
50308082 |
taaatagatgaattacatattggggaaaaatgcataaggaagatcatacatggttggatttggaaaaaatccaccgacacaagctcaccatagaggtgct |
50308181 |
T |
|
| Q |
135 |
tcagtgccaaatttgtcaccaaatgaagagataaactgtcc |
175 |
Q |
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| T |
50308182 |
tcagtgccaaagttatcacctaacgaatagatagactgtcc |
50308222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 267 - 390
Target Start/End: Original strand, 50308232 - 50308355
Alignment:
| Q |
267 |
ttcaatgataaacgtacagattcgcctaagacggaaccttgcacatatgttaattcccttgcagccggtgttctagcaaagcttgcttctttgggttaac |
366 |
Q |
| |
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||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| |||| |||| ||| ||||||||||| ||||||| |
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| T |
50308232 |
ttcaatgataatcgtacggattcacctaagactgaaccttgcacgtatgttaattcgcttgcagttggtgctctaataaaacttgcttctttaggttaac |
50308331 |
T |
|
| Q |
367 |
ttagcttaatttcatgttagtgtt |
390 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
50308332 |
ctagcttaatttcatgttaatgtt |
50308355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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