View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_2 (Length: 729)
Name: NF7523_low_2
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_2 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 540; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 146 - 729
Target Start/End: Complemental strand, 4374713 - 4374131
Alignment:
| Q |
146 |
tgaaagttgttccagatctcaataaaaacttatggtcacaattacgagaaaacacattttctatataggacagacacatgtagttacattcaattaccgg |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4374713 |
tgaaagttgttccagatctcaataaaaacttatggtcacaattacgagaaaacacattttctatataggacagacacatgtagttacattcaattacctg |
4374614 |
T |
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| Q |
246 |
tgtctacgggtaagtgtcgtgtctggtgtctatgtttgtatctgtgttagtgcttcatagcacatttccagccttaattttgagttttcatataaattgt |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4374613 |
tgtctacgggtaagtgtcgtgtctggtgtctatgtttgtatctgtgttagtgcttcatagcacatttccagccttaattttgagttttcatagaaattgt |
4374514 |
T |
|
| Q |
346 |
taaactgaaaaggaatagaaataaaagacgggacgttgggatttttaatgtacaagaaaatacctttgaatcaccaatatcttacttctcatacgcctct |
445 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4374513 |
taaactgaaaaggagtagaaataaaagacgggacgttgggatttt-aatgtacaagaaaatacctttgaatcaccaatatcttacttctcatacgcctct |
4374415 |
T |
|
| Q |
446 |
tttgaatcagacattgataaaaggaagcagatccaaaccatgtgaccattaaggcacacatgataattgacgcattcttcatacgaactcaacctgctac |
545 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4374414 |
tttgaatcagacattgataaaaggaagcagatccaaaccatgtgaccattaaggcacacatgataattgacgcattcttcatacgaactcaacctgtaac |
4374315 |
T |
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| Q |
546 |
aagggatttgcgctatcatattagcctacagcatgctccacaacctcaccttgcaatacagacaaacctttgtcggattgaggtgagtgcgtctgttaat |
645 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
4374314 |
aagggatttgcgctatcatattagcctacagcatgctccacaacctcgccttgcaatacagacaaacctttgtcagattgaggtgagcgcgtctgttaat |
4374215 |
T |
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| Q |
646 |
aagcatcctcttgacatgcgtagttgcaaacggtaaacatcaagaccaatattcacaaagattatcagttcattaaagctgatc |
729 |
Q |
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| T |
4374214 |
aagcatcctcttgacatgcgtagttgcaaacggtaaacatcaagaccaatattcacaaaaattatcagttcattaaagctgatc |
4374131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 276 - 687
Target Start/End: Complemental strand, 4382817 - 4382407
Alignment:
| Q |
276 |
tatgtttgtatctgtgttagtgcttcatagcacatttccagccttaattttgagttttcatataaattgttaaactgaaaaggaatagaaataaaagacg |
375 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||||| || |
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| T |
4382817 |
tatgtttgtatctgtgttggtgtttcatagcacatttccagccttaattttgatatttcatagaaattgttaaactggaaaagaataaaaataaaaggcg |
4382718 |
T |
|
| Q |
376 |
ggacgttgggatttttaatgtacaagaaaatacctttgaatcaccaatatcttacttctcatacgcctcttttgaatcagacattgataaaaggaagcag |
475 |
Q |
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| T |
4382717 |
ggacgttgggatttttcatgtacaagaaaataccttagaatcatca---tcttagccctcgtacgcctcttctgaatcagacaatggttaatgggagcag |
4382621 |
T |
|
| Q |
476 |
atccaaaccatgtgaccattaaggcacacatgataattgacgcattcttcatacgaactcaacctgctacaagggatttgcgctatcatatta--gccta |
573 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||| ||| ||||| ||||||||| ||||||| |||| | |||||||||| ||||| |
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| T |
4382620 |
atccaaaccatgtgaccattgaggcacacatgacaattgacgcattcatcacacgaagtcaacctgcaacaagggttttgtggtatcatattagcgccta |
4382521 |
T |
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| Q |
574 |
cagcatgctccacaacctcaccttgcaatacagacaaacctttgtcggattgaggtgagtgcgtctgttaataagcatcctcttgacatgcgtagttgca |
673 |
Q |
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||||||| ||||||||||| || |||||||||||||||| |||||||| |||||||| || |||| ||||||||||||||| ||||| |||||||||| |
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| T |
4382520 |
cagcatgatccacaacctcgttttacaatacagacaaacctctgtcggatggaggtgagcgcctctggtaataagcatcctctggacattcgtagttgca |
4382421 |
T |
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| Q |
674 |
aacggtaaacatca |
687 |
Q |
| |
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|||||||||||||| |
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| T |
4382420 |
aacggtaaacatca |
4382407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 4387447 - 4387315
Alignment:
| Q |
1 |
gatataaatttattggacttgctgttatttaccgtttcatgctagta---taaatactgttgtaatagaatctagtagtataaattcttctatctaacgt |
97 |
Q |
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||||||| | |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4387447 |
gatataactctattggacttgctgttatttacagtttcatgctagtagtataaatactgttgtaatagaatctagtagtataaattcttctatctaacgt |
4387348 |
T |
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| Q |
98 |
gcatgttcggattggtggttagtttgacggaat |
130 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
4387347 |
gcatgtttggattggtggttagtttgacggaat |
4387315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 4375259 - 4375156
Alignment:
| Q |
45 |
gtataaatactgttgtaatagaatctagtagtataaattcttctatctaacgtgcatgttcggattggtggttagtttgacggaatctcggcagatcatc |
144 |
Q |
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|||||| |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4375259 |
gtataattactgttgtaatagaagctagtagtataaatacttctatctaagatgcatgttcggattggtggttagtttgacggaatctcggcagatcatc |
4375160 |
T |
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| Q |
145 |
gtga |
148 |
Q |
| |
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|||| |
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| T |
4375159 |
gtga |
4375156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 472 - 675
Target Start/End: Complemental strand, 4355839 - 4355636
Alignment:
| Q |
472 |
gcagatccaaaccatgtgaccattaaggcacacatgataattgacgcattcttcatacgaactcaacctgctacaagggatttgcgctatcatattagcc |
571 |
Q |
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|||||| | ||||||||| |||||||||||||||||||||| || ||||||||||| |||| |||||| | || || | |||| | |||||||||||| |
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| T |
4355839 |
gcagattccaaccatgtgtccattaaggcacacatgataatcaacacattcttcatatgaacccaacctacaactagcggtttgtggaatcatattagcc |
4355740 |
T |
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| Q |
572 |
tacagcatgctccacaacctcaccttgcaatacagacaaacctttgtcggattgaggtgagtgcgtctgttaataagcatcctcttgacatgcgtagttg |
671 |
Q |
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| ||||||||||||||||||| |||| ||||| ||||||||| |||||||| ||| |||| || | ||||||| ||||||||| |||||| ||||||| |
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| T |
4355739 |
tgcagcatgctccacaacctcgccttacaataaggacaaacctctgtcggatggagctgagcgcctttgttaatgagcatcctcctgacatttgtagttg |
4355640 |
T |
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| Q |
672 |
caaa |
675 |
Q |
| |
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|||| |
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| T |
4355639 |
caaa |
4355636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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