View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_20 (Length: 389)
Name: NF7523_low_20
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 48492126 - 48492480
Alignment:
| Q |
16 |
ataatacactaagcaaaatgtggaaagaaatttaaacaagaaaccttgaaaacttagtttaagattagtgcttacagaggccacaaaaagagtagaagtg |
115 |
Q |
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| T |
48492126 |
ataatacactaagcaaaatgtggaaagaaatttaaacaagaaaccttgaaaacttagtttaagattagtgcttacagaggccacaaaaagagtagaagtg |
48492225 |
T |
|
| Q |
116 |
gatttgtcaaaaagtatgaaagcaaaagtaccactgagatgaccaacaacgtgattgggaggataaggtgctctgtcacgtaaagctttgtaagcctcaa |
215 |
Q |
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| T |
48492226 |
gatttgtcaaaaagtatgaaagcaaaagtgccactgagatgaccaacaacgtgattgggaggataaggtgctctgtcacgtaaagctttgtaagcctcaa |
48492325 |
T |
|
| Q |
216 |
tcaccaaaacaacttcattagctgacttggctagtccatattgttgccttaatctccctaaattgtctagagctccctcaaacatgcagaatatctcatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48492326 |
tcaccaaaacaacttcattagctgacttggctagtccatattgttgccttaatctccctaaattgtctagagctccctcaaacatgcagaatatctcatc |
48492425 |
T |
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| Q |
316 |
ttttacaccaaacattctgccatattccattcaataagatgataaagaaactact |
370 |
Q |
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| T |
48492426 |
ttttacaccaaacattctgccattttccattcaataagatgataaagaaactact |
48492480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 110 - 315
Target Start/End: Complemental strand, 7795087 - 7794882
Alignment:
| Q |
110 |
gaagtggatttgtcaaaaagtatgaaagcaaaagtaccactgagatgaccaacaacgtgattgggaggataaggtgctctgtcacgtaaagctttgtaag |
209 |
Q |
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|||||||| ||||| |||| ||||||||||||| ||||||| ||||| |||||||| ||||| | ||| |||||||| | || |||||||||||||||| |
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| T |
7795087 |
gaagtggacttgtcgaaaactatgaaagcaaaactaccactaagatggccaacaacatgattagcagggtaaggtgcacgatcgcgtaaagctttgtaag |
7794988 |
T |
|
| Q |
210 |
cctcaatcaccaaaacaacttcattagctgacttggctagtccatattgttgccttaatctccctaaattgtctagagctccctcaaacatgcagaatat |
309 |
Q |
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||||||||| | ||| |||||||| || || || | ||||||||||| || || || ||||||||||||||||||| ||| ||||||| ||||||||| |
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| T |
7794987 |
cctcaatcataagaactacttcatttgcagattttgaaagtccatattgctgtctcaagctccctaaattgtctagagatccttcaaacaagcagaatat |
7794888 |
T |
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| Q |
310 |
ctcatc |
315 |
Q |
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|||||| |
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| T |
7794887 |
ctcatc |
7794882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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