View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_21 (Length: 382)
Name: NF7523_low_21
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 42325081 - 42325322
Alignment:
| Q |
14 |
acatcagggtctgtcatcacctacaccaaccaaatatgtatatattagctcagtcatttaggttttgtcaataccattccaataaagcacaaatgatagt |
113 |
Q |
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| T |
42325081 |
acatcagggtctgtcatcacctacaccaaccaaatatgtatatattagctcagtcatttaggttttgtcaataccattccaataaagcacaaatgatagt |
42325180 |
T |
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| Q |
114 |
tgttagtttgttagagagagggatgtttgatgttgtgagagattaaacaatatgaaactaattaaacaaatctctgactatatctaacaaggtgaaatat |
213 |
Q |
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| T |
42325181 |
tgttagtttgttagagagatggatgtttgatgttgtgagagattaaacaatatgaaactaattaaacaaatctctgactatatctaacaaggtgaaatat |
42325280 |
T |
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| Q |
214 |
gtttagcgaag---attgaactctgaaccctgcatataaata |
252 |
Q |
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| T |
42325281 |
gtttagcgaagaatattgaactctgaaccctgcatataaata |
42325322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 42325363 - 42325471
Alignment:
| Q |
274 |
ggacagacacatagcgtgtttgtgtgagtatgtctgataatagaaaacaacaaaaaatatatgtataccagtgtatagaaggacctcatgtcaccaccat |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325363 |
ggacagacacatagcgtgtttgtgtgagtatgtctgataatagaaaacaacaaaaaatatatgtataccagtgtatagaaggacctcatgtcaccaccat |
42325462 |
T |
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| Q |
374 |
caatctcaa |
382 |
Q |
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| T |
42325463 |
caatctcaa |
42325471 |
T |
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