View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_22 (Length: 357)
Name: NF7523_low_22
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 44246274 - 44246580
Alignment:
| Q |
13 |
atatatattaaagagcacatgttaaca---taaagaaacttaa---tctcgtgattgcgcctatttgaatgattatgatatattatttttattctnnnnn |
106 |
Q |
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| T |
44246274 |
atatatatttaagagcacaggctaacaagataaagaaacttaactctcttgtgattgtgcctatttgaatgattacgatatattatttttattctaaaaa |
44246373 |
T |
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| Q |
107 |
nnnttatatttaagggaaaaaatg-----tctctatcgtgaattaccattttgtaaaattagtttctttgacaaatttctattaaacaaactttatcata |
201 |
Q |
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| T |
44246374 |
aa-tgatatttacgggggaaaaagcaagatctctatcgtgaacaaccattttctgaaatcagtttctttgacaaatttctatcaaacaaactttatcata |
44246472 |
T |
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| Q |
202 |
tcaacagcttgaggaatgtctgaaaa-ggatattctttgaaatgatggagtcggacattgtctggaacctagtttgctggaaacaaaattattgttagta |
300 |
Q |
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| T |
44246473 |
tcaacaacttgaagaatgtctgaaaaaggatattctttgaaatgatggagtcagacattgtctggaacctagtttgctggaaacaaaattattgttagta |
44246572 |
T |
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| Q |
301 |
acagttaa |
308 |
Q |
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| T |
44246573 |
acagttaa |
44246580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 39731805 - 39731749
Alignment:
| Q |
224 |
aaaaggatattctttgaaatgatggagtcggacattgtctggaacctagtttgctgg |
280 |
Q |
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| T |
39731805 |
aaaaggatattctttgtaacaatggagtcagacatggtctggaacctactttgctgg |
39731749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 7082116 - 7082159
Alignment:
| Q |
234 |
tctttgaaatgatggagtcggacattgtctggaacctagtttgc |
277 |
Q |
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| T |
7082116 |
tctttgaaaggatggagttggacattgtctggaaccgagtttgc |
7082159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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