View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7523_low_24 (Length: 349)

Name: NF7523_low_24
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7523_low_24
NF7523_low_24
[»] chr3 (4 HSPs)
chr3 (14-334)||(1575464-1575788)
chr3 (208-269)||(27516304-27516365)
chr3 (208-269)||(4986993-4987054)
chr3 (171-216)||(40687008-40687053)
[»] chr5 (5 HSPs)
chr5 (14-116)||(2190699-2190793)
chr5 (208-269)||(29801656-29801717)
chr5 (171-217)||(26647764-26647810)
chr5 (171-217)||(26919349-26919395)
chr5 (208-269)||(38503512-38503573)
[»] chr6 (1 HSPs)
chr6 (171-216)||(10365011-10365056)
[»] chr7 (1 HSPs)
chr7 (172-216)||(40786342-40786386)
[»] chr4 (1 HSPs)
chr4 (225-269)||(22422737-22422781)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 1575788 - 1575464
Alignment:
Q  14 aatatacacacacgagaagcgacgaaccaatctccacccttgaatttttatttatgccttccttcctgtaaccaattgaattccctctcccatgtttaac 113  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1575788 aatacacacacacgagaagcgacgaaccattctccacccttgaatttttatttatgccttccttcctgtaaccaattgaattccctctcccatgtttaac 1575689  T
Q  114 tctccatcacatgatttccactcgttgcctttggtctcgtgctgcacaacacttccgttctcttataccaaacaataaatgaaatatactttatttctca 213  Q
    |||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1575688 tctccatcacatgatttccactcgttacctttgatctcgtgctgtacaacacttccgttctcttataccaaacaataaatgaaatatactttatttctca 1575589  T
Q  214 cattctctattacctatttctccattctcaacttttcttccaaaccaaatacaccccctcttaa----ataaaggaatttatgaatatttgtaagaaagg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  1575588 cattctctattacctatttctccattctcaacttttcttccaaaccaaatacaccccctcttaaatagataaaggaatttatgaatatttgtaagaaagg 1575489  T
Q  310 tataaattactccaaaccatgttat 334  Q
    |||||||||||||||||||||||||    
T  1575488 tataaattactccaaaccatgttat 1575464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 27516304 - 27516365
Alignment:
Q  208 ttctcacattctctattacctatttctccattctcaacttttcttccaaaccaaatacaccc 269  Q
    |||||| | ||||| |||||||||||||  |||||||||| |||||||||||||| ||||||    
T  27516304 ttctcatactctctcttacctatttctctcttctcaacttctcttccaaaccaaacacaccc 27516365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 4986993 - 4987054
Alignment:
Q  208 ttctcacattctctattacctatttctccattctcaacttttcttccaaaccaaatacaccc 269  Q
    |||||| | ||||| ||||||| |||||  |||||||||| |||||||||||||| ||||||    
T  4986993 ttctcatactctctcttacctacttctctcttctcaacttctcttccaaaccaaacacaccc 4987054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 40687008 - 40687053
Alignment:
Q  171 ttctcttataccaaacaataaatgaaatatactttatttctcacat 216  Q
    |||||||||||||||||||| || |||| |||| ||||||||||||    
T  40687008 ttctcttataccaaacaatacatcaaatctactatatttctcacat 40687053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 2190699 - 2190793
Alignment:
Q  14 aatatacacacacgagaagcgacgaaccaatctccacccttgaatttttatttatgccttccttcctgtaaccaattgaattccctctcccatgtttaac 113  Q
    ||||||||| ||||||||||||||||||| || | ||||||| |||||||||        ||||||||||||||||||||||| ||||||||||||| ||    
T  2190699 aatatacacgcacgagaagcgacgaaccattcacaacccttggatttttatt--------ccttcctgtaaccaattgaattctctctcccatgttttac 2190790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 29801717 - 29801656
Alignment:
Q  208 ttctcacattctctattacctatttctccattctcaacttttcttccaaaccaaatacaccc 269  Q
    |||||| | ||||| ||||||| |||||  ||||||||||||||||||||||||| ||||||    
T  29801717 ttctcatactctctcttacctacttctctcttctcaacttttcttccaaaccaaacacaccc 29801656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 26647764 - 26647810
Alignment:
Q  171 ttctcttataccaaacaataaatgaaatatactttatttctcacatt 217  Q
    ||||||| |||||||||||  || |||||||||||||||||||||||    
T  26647764 ttctcttctaccaaacaatccatcaaatatactttatttctcacatt 26647810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 26919349 - 26919395
Alignment:
Q  171 ttctcttataccaaacaataaatgaaatatactttatttctcacatt 217  Q
    ||||||| |||||||||||  || |||||||||||||||||||||||    
T  26919349 ttctcttctaccaaacaatccatcaaatatactttatttctcacatt 26919395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 38503573 - 38503512
Alignment:
Q  208 ttctcacattctctattacctatttctccattctcaacttttcttccaaaccaaatacaccc 269  Q
    |||||| | ||||| ||||||| |||||  |||||||||| |||||||||||||| ||||||    
T  38503573 ttctcatactctctcttacctacttctctcttctcaacttctcttccaaaccaaacacaccc 38503512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 10365056 - 10365011
Alignment:
Q  171 ttctcttataccaaacaataaatgaaatatactttatttctcacat 216  Q
    |||||||||||||||||||  || |||| |||||||||||||||||    
T  10365056 ttctcttataccaaacaatccatcaaatctactttatttctcacat 10365011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 40786342 - 40786386
Alignment:
Q  172 tctcttataccaaacaataaatgaaatatactttatttctcacat 216  Q
    ||||||||||||||||||| || |||| |||| ||||||||||||    
T  40786342 tctcttataccaaacaatacatcaaatctactctatttctcacat 40786386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 22422781 - 22422737
Alignment:
Q  225 acctatttctccattctcaacttttcttccaaaccaaatacaccc 269  Q
    |||||||||||  ||| ||||||||||||||||||||| ||||||    
T  22422781 acctatttctctcttcacaacttttcttccaaaccaaacacaccc 22422737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University