View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7523_low_27 (Length: 331)
Name: NF7523_low_27
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 34238351 - 34238597
Alignment:
| Q |
16 |
atgtaactaataggaattgattctaaaaaatgagccatttttccctatagttggaaaaattcatttaaggaaattgtgtaagtgattatacataccgcct |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34238351 |
atgtaactaataggaattgattctaaacaatgagccatttttccctatagttggaaaaattcatttaaggaaattgtgtaagtgattatacataccgcct |
34238450 |
T |
|
| Q |
116 |
tctcattggaagtgctgcaaactgcaacattgactccttgagttaaagcctgatcaacaagcctgtatgtttgatagaaagaaacagataataagataag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34238451 |
tctcattggaagtgctgcaaactgcaacattgactccttgagttaaagcctgatcaacaagcctgtatgtttgatagaaagaaacagataataagataag |
34238550 |
T |
|
| Q |
216 |
--acagagttcatgtctggatataaaagaaacagctctttttaatta |
260 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34238551 |
gcagagagttcatgtctggatataaaagaaacagctctttttaatta |
34238597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 34238916 - 34238980
Alignment:
| Q |
252 |
ttttaattaatgttgcaacacaaaacatgaaaattagatcgaaaatcaaaacaacatgatgttgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34238916 |
ttttaattaatgttgcaacacaaaacatgaaaattagatcgaaaatcaaaacaacatgatgttgt |
34238980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University