View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_28 (Length: 328)
Name: NF7523_low_28
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 42663269 - 42662943
Alignment:
| Q |
10 |
aatatattttatgtatc-atatctgacattcttatctttgctattatg--------tgtgcattttatgcatctacgtaccaaatagaaatgagcatagg |
100 |
Q |
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| T |
42663269 |
aatatattttatgtatccatatctgacattcttatctttgccattatgcttagctttgtgcattttatgcatctacgtaccaaatagaaatgagcatagg |
42663170 |
T |
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| Q |
101 |
attcttactgaaatagtgtacacatgaaaatgttatcctaaggtattttgcaaatgaacttttaagacatcaatctttgacaagttatcttacttattct |
200 |
Q |
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| T |
42663169 |
attcttactgaaatagtgtacacatgaaaatgttatcctaaggtattt-gcaaatgaacttttaagacatcaatctttgacaagttatcttacttattct |
42663071 |
T |
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| Q |
201 |
gttattcagcatcttccaattccaattgtgaaaagcaattttgatgttggaaaagatttctgatcacccattttaaatctgtttgttacagtatttttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42663070 |
gttattcagcatcttccaattccaattgtgaaaagcaattttgatgttggaaaagatttctgatcacccattttaaatctgtttggtacagtatttttat |
42662971 |
T |
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| Q |
301 |
gnnnnnnnnttcacttatttttcatttt |
328 |
Q |
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| T |
42662970 |
gaaaaaaaattcacttatttttcatttt |
42662943 |
T |
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