View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_29 (Length: 325)
Name: NF7523_low_29
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 12613257 - 12612964
Alignment:
| Q |
13 |
aatatctaatgaaaaatattactttactgaaaattcaaaagcttccctcttcaccaatatctaatgaaaaatattacaagaaaggtccatattcatcaac |
112 |
Q |
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| T |
12613257 |
aatatctaatgaaaaatattactttactgaaaattcaaaagcttccctcttcaccaatatctaatgaaaaatattacaagaaaggtccatattcatcaac |
12613158 |
T |
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| Q |
113 |
acacatgcataatggccaaacacatgnnnnnnngtaaaacaatcattaaacttattcatacttgagtgtttgtctgacgtttgcgtggaagcattgaaac |
212 |
Q |
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| T |
12613157 |
acacatgcataatggccaaacacatgtttttttgtaaaacaatcattaaacttattcatacttgagtgtttgtctgacg-ttgcgtggaagcattgaaac |
12613059 |
T |
|
| Q |
213 |
ccttagttcactcaaatatatgaagaaccctaggtttcaaattaattgttcatcatgcccaaaccatctgtaaatcctccaatgaagcaacttag |
307 |
Q |
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| T |
12613058 |
ccttagttcactcaaatatatgaagaaccctaggtttcaaattaattgatcatcatgcccaaaccatctgttaatcctccaatgaagcaacttag |
12612964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 12613288 - 12613236
Alignment:
| Q |
35 |
tttactgaaaattcaaaagcttccctcttcaccaatatctaatgaaaaatattac |
89 |
Q |
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| T |
12613288 |
tttactggaaatgcaaaagcttccctct--accaatatctaatgaaaaatattac |
12613236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 290
Target Start/End: Complemental strand, 16715120 - 16714884
Alignment:
| Q |
53 |
gcttccctcttcaccaatatctaatgaaaaatattacaagaaaggtccatattcatcaacacacatgcataatggccaaacacatgnnnnnnngtaaaac |
152 |
Q |
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| T |
16715120 |
gcttcccttgtcaccaatatctcatgaaaaatattaggcgaaaggtccatatccaccaacagacgtgcatattggcaaaacacacaaatttttttagaac |
16715021 |
T |
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| Q |
153 |
aatcattaaacttattcatacttgagtgtttgtctgacgtttgcgtggaagcattgaaacccttagttcactcaaatatatgaagaaccctaggtttcaa |
252 |
Q |
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| T |
16715020 |
tatcattaaacttattcatacttgagcatttttctaacgtt-gcatggaagcattgaaatcctcaatacactcaaatagttgaagaaccgcaggtttcaa |
16714922 |
T |
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| Q |
253 |
attaattgttcatcatgcccaaaccatctgtaaatcct |
290 |
Q |
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| T |
16714921 |
gttaattgttcctaatgccaaaaccattcgtaaatcct |
16714884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 2751160 - 2751264
Alignment:
| Q |
193 |
ttgcgtggaagcattgaaacccttagttcactcaaatatatgaagaaccctaggtttcaaattaattgttcatcatgcccaaaccatctgtaaatcctcc |
292 |
Q |
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||||||||||||||||||| ||||||| || |||||| ||||||||| ||||||||| || ||| ||| | ||||||||| ||| ||||||||| |
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| T |
2751160 |
ttgcgtggaagcattgaaatccttagtccaatcaaatgggagaagaaccccaggtttcaagttgattattcctaatgcccaaattgtctttaaatcctct |
2751259 |
T |
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| Q |
293 |
aatga |
297 |
Q |
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||||| |
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| T |
2751260 |
aatga |
2751264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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