View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7523_low_3 (Length: 673)

Name: NF7523_low_3
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7523_low_3
NF7523_low_3
[»] chr1 (1 HSPs)
chr1 (15-666)||(52108649-52109297)
[»] chr8 (3 HSPs)
chr8 (273-666)||(44519922-44520314)
chr8 (123-210)||(44526207-44526294)
chr8 (215-266)||(44520337-44520388)


Alignment Details
Target: chr1 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 15 - 666
Target Start/End: Complemental strand, 52109297 - 52108649
Alignment:
Q  15 aacctgtggtgacttatgcttaattcattactcttttgaaacctcaaaatttctttaggaacactgttttcttcacacttgaagccaccttcttcatttt 114  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52109297 aaccggtggtgaattatgcttaattcattactcttttgaaacctcaaaatttctttaggaacactgttttcttcacacttgaagtcaccttcttcatttt 52109198  T
Q  115 caccacactccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaatgtta 214  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52109197 catcacactccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaatgtta 52109098  T
Q  215 atgtttctaagctaatttctcaccaattaaatccaaatccacttccaaatccccaaacaatttcaaacaattttagggttttactattcaatctctatgg 314  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  52109097 atgtttccaagctaatttctcaccaattaaatccaaatccacttccaaatccccaaa---tttcaaacaattttagggttttactattcaatctctatgg 52109001  T
Q  315 aacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcgggtcatcatcttc 414  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52109000 aacccaagattccaaatttccggaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcgggtcatcatcttc 52108901  T
Q  415 gattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgagtttattcaga 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52108900 gattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgagtttattcaga 52108801  T
Q  515 aattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaaaaacatgattcctgttttagggtatttagaaaaaat 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52108800 aattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaaaaacatgattcctgttttagggtatttagaaaaaat 52108701  T
Q  615 tgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52108700 tgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt 52108649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 273 - 666
Target Start/End: Complemental strand, 44520314 - 44519922
Alignment:
Q  273 aatttcaaacaattttagggttttactattcaatctctatggaacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtgatt 372  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44520314 aatttcaaacaattttagggttttattcttcaatctctatggaacccaagattccaaatttcctgaatacgagatgcctactgttacatggggtgtgatt 44520215  T
Q  373 caaggccgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt 472  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44520214 caaggtcgcaaagagaaactcgtttcgagggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt 44520115  T
Q  473 caaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgt 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44520114 caaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttaattttgggttgtagtgt 44520015  T
Q  573 tagaaaaaacatgattcctgttttagggtatttagaaaaaattgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt 666  Q
     |||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44520014 gagaaaaaacatgattcgtattttagggtatttataaaaaatt-ggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt 44519922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 44526294 - 44526207
Alignment:
Q  123 tccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaat 210  Q
    |||||| |||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||| | ||||||||||||    
T  44526294 tccataattctgcacccagtgcttcacttcctctatcaaatcaatgctcacaagaagaaaattcctcactatattctcatcacgcaat 44526207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 44520388 - 44520337
Alignment:
Q  215 atgtttctaagctaatttctcaccaattaaatccaaatccacttccaaatcc 266  Q
    ||||||||||||||||||| ||||||||| |||||||| |||||||| ||||    
T  44520388 atgtttctaagctaatttcacaccaattatatccaaatgcacttccacatcc 44520337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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