View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7523_low_33 (Length: 301)

Name: NF7523_low_33
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7523_low_33
NF7523_low_33
[»] chr2 (4 HSPs)
chr2 (186-286)||(41648528-41648628)
chr2 (15-97)||(41648725-41648812)
chr2 (203-286)||(43229819-43229904)
chr2 (186-218)||(43229769-43229801)
[»] chr3 (2 HSPs)
chr3 (3-70)||(40942909-40942976)
chr3 (16-66)||(5418061-5418111)
[»] chr4 (7 HSPs)
chr4 (16-70)||(46945247-46945301)
chr4 (13-80)||(24009499-24009566)
chr4 (16-70)||(1803181-1803235)
chr4 (16-66)||(25133951-25134001)
chr4 (37-79)||(27890627-27890669)
chr4 (16-66)||(40797172-40797222)
chr4 (16-80)||(44377614-44377673)
[»] chr1 (3 HSPs)
chr1 (1-70)||(7994760-7994829)
chr1 (16-79)||(15257918-15257981)
chr1 (16-66)||(24575318-24575368)
[»] chr8 (1 HSPs)
chr8 (16-79)||(39477423-39477486)
[»] chr6 (1 HSPs)
chr6 (3-70)||(13311362-13311429)
[»] chr5 (3 HSPs)
chr5 (16-66)||(34856964-34857014)
chr5 (16-79)||(18879620-18879688)
chr5 (16-80)||(27195427-27195491)
[»] scaffold0444 (1 HSPs)
scaffold0444 (16-80)||(1485-1544)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 41648628 - 41648528
Alignment:
Q  186 gcaatttgtgacatgataaacatatgcatttgaaagtgttggttgtgttatgtcaaatcaaaatgtcctaatcgcaaccccattaccagcatgtgaatat 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41648628 gcaatttgtgacatgataaacatatgcatttgaaagtgttggttgtgttatgtcaaatcaaaatgtcctaatcgcaaccccattaccagcatgtgaatat 41648529  T
Q  286 t 286  Q
    |    
T  41648528 t 41648528  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 41648812 - 41648725
Alignment:
Q  15 tgaaccaattcttatcgaattaagtcgaactcagacagtttcgactcg-----actcattttcagtcctaaagaaatgtattgctata 97  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||||     |||||||||||| ||||| ||||||||||||||||    
T  41648812 tgaaccaatttttatcgagttaagtcaaactcagacagtttcgactcgactcgactcattttcagccctaatgaaatgtattgctata 41648725  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 43229819 - 43229904
Alignment:
Q  203 aaacatatgcatttgaaagtgt---tggttgtgttatgtcaaatcaaaatgtcctaatcgcaaccccattaccagcatgtgaatatt 286  Q
    |||||| ||||||||||||||    ||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| ||||    
T  43229819 aaacatgtgcatttgaaagtgcggctggttgtgttatgtcaaatcaaaatgtccgagtcgcaa-cccattaccagcatgtgagtatt 43229904  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 43229769 - 43229801
Alignment:
Q  186 gcaatttgtgacatgataaacatatgcatttga 218  Q
    ||||||||||||||||||||||| |||||||||    
T  43229769 gcaatttgtgacatgataaacatgtgcatttga 43229801  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 40942976 - 40942909
Alignment:
Q  3 cgagtttggtgttgaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactcattt 70  Q
    ||||||| | || ||||||||||||||||| || |||||| ||||||||| |||||||||||||||||    
T  40942976 cgagtttcgagtcgaaccaattcttatcgagttgagtcgagctcagacagattcgactcgactcattt 40942909  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 5418111 - 5418061
Alignment:
Q  16 gaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactc 66  Q
    ||||||||||||||||| | ||| ||||||||||||  |||||||||||||    
T  5418111 gaaccaattcttatcgagtcaagccgaactcagacaagttcgactcgactc 5418061  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 46945247 - 46945301
Alignment:
Q  16 gaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactcattt 70  Q
    ||||||||||||||||| || |||||| ||||||||| |||||||||||||||||    
T  46945247 gaaccaattcttatcgagttgagtcgagctcagacaggttcgactcgactcattt 46945301  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 24009499 - 24009566
Alignment:
Q  13 gttgaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactcattttcagtcctaa 80  Q
    ||||||||||||||||||||||   ||||| |||||| || |||||||||||| |||| ||| |||||    
T  24009499 gttgaaccaattcttatcgaatcgtgtcgagctcagatagattcgactcgactaatttccagccctaa 24009566  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 1803235 - 1803181
Alignment:
Q  16 gaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactcattt 70  Q
    ||||||||| |||||||||  | |||||||||||||| ||| |||||||||||||    
T  1803235 gaaccaatttttatcgaatcgaatcgaactcagacaggttcaactcgactcattt 1803181  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 25134001 - 25133951
Alignment:
Q  16 gaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactc 66  Q
    ||||||||||||||||| |  |||||| ||||||||| |||||||||||||    
T  25134001 gaaccaattcttatcgagtcgagtcgagctcagacagattcgactcgactc 25133951  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 27890669 - 27890627
Alignment:
Q  37 agtcgaactcagacagtttcgactcgactcattttcagtccta 79  Q
    |||||||||||||||  ||||||||||||||||||||| ||||    
T  27890669 agtcgaactcagacaaattcgactcgactcattttcagcccta 27890627  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 40797222 - 40797172
Alignment:
Q  16 gaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactc 66  Q
    ||||||||||||||||| |  |||||| ||||||||| |||||||||||||    
T  40797222 gaaccaattcttatcgagtcgagtcgagctcagacagattcgactcgactc 40797172  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 44377673 - 44377614
Alignment:
Q  16 gaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactcattttcagtcctaa 80  Q
    |||||||||||||||||     ||||| ||||||||| ||||||||||||||||| ||| |||||    
T  44377673 gaaccaattcttatcga-----gtcgagctcagacaggttcgactcgactcatttccagccctaa 44377614  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 7994829 - 7994760
Alignment:
Q  1 gtcgagtttggtgttgaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactcattt 70  Q
    ||||||||| | | |||| ||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  7994829 gtcgagtttcgagctgaatcaattcttatcgagttgagtcgaactcaaacaggttcgactcgactcattt 7994760  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 15257918 - 15257981
Alignment:
Q  16 gaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactcattttcagtccta 79  Q
    ||||||||||||||||| |  ||| || ||||||||| ||||||||||||||||||||| ||||    
T  15257918 gaaccaattcttatcgagtcgagttgagctcagacagattcgactcgactcattttcagcccta 15257981  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 24575368 - 24575318
Alignment:
Q  16 gaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactc 66  Q
    ||||||||||||||||| | || |||| ||||||||| |||||||||||||    
T  24575368 gaaccaattcttatcgattcaaatcgagctcagacaggttcgactcgactc 24575318  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 39477486 - 39477423
Alignment:
Q  16 gaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactcattttcagtccta 79  Q
    ||||||||||||||||| |  |||||| ||||||||| ||||||||||||||||| ||| ||||    
T  39477486 gaaccaattcttatcgagtcgagtcgagctcagacagattcgactcgactcatttccagcccta 39477423  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 13311429 - 13311362
Alignment:
Q  3 cgagtttggtgttgaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactcattt 70  Q
    ||||||| | || ||||||||||||||||| |  |||||| |||||||||  ||||||||||||||||    
T  13311429 cgagttttgagtcgaaccaattcttatcgagtcgagtcgagctcagacagactcgactcgactcattt 13311362  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 34857014 - 34856964
Alignment:
Q  16 gaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactc 66  Q
    ||||||||||||||||| |  | |||||||||||||| |||||||||||||    
T  34857014 gaaccaattcttatcgagtcgaatcgaactcagacagattcgactcgactc 34856964  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 18879688 - 18879620
Alignment:
Q  16 gaaccaattcttatcgaattaagtcgaactcagaca-----gtttcgactcgactcattttcagtccta 79  Q
    ||||||||||||||||| |  || ||||||||||||     | ||||||||||||||||||||||||||    
T  18879688 gaaccaattcttatcgagtcgagccgaactcagacagattcggttcgactcgactcattttcagtccta 18879620  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 27195491 - 27195427
Alignment:
Q  16 gaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactcattttcagtcctaa 80  Q
    |||||||||||||| || |  |||||| ||||||||  ||||||||||||||||| ||| |||||    
T  27195491 gaaccaattcttattgagtcgagtcgagctcagacatgttcgactcgactcatttccagccctaa 27195427  T

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Target: scaffold0444 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 1485 - 1544
Alignment:
Q  16 gaaccaattcttatcgaattaagtcgaactcagacagtttcgactcgactcattttcagtcctaa 80  Q
    |||||||||||||||||     ||||| ||||||||| ||||||||||||||||| ||| |||||    
T  1485 gaaccaattcttatcga-----gtcgagctcagacaggttcgactcgactcatttccagccctaa 1544  T

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