View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_35 (Length: 297)
Name: NF7523_low_35
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 48569189 - 48569421
Alignment:
| Q |
1 |
ctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtatattcat |
100 |
Q |
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| T |
48569189 |
ctctccaatacctttttggttggaaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtatattcat |
48569288 |
T |
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| Q |
101 |
ggaaaattatggtactttggtctactcttggaaggttgacatcttct-gaaataccttcaaggcatttcctttctttggttgtaccacagcctttccaat |
199 |
Q |
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| T |
48569289 |
agaaaattatggtactttggtctactcttggaaggttgacatcttctggaaataccttcaaggcatttcctttctttggttgtaccacagcctttccaat |
48569388 |
T |
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| Q |
200 |
acttctgttttctgtgtgaaaattgattatgaatt |
234 |
Q |
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| T |
48569389 |
acttctgttttc--tgtgaaaattgattatgaatt |
48569421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 10821889 - 10821749
Alignment:
| Q |
7 |
aatacctattttgttggaaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtatattcatggaaaa |
106 |
Q |
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| T |
10821889 |
aatacatattttgtcggaaatgctccgatggcccatacggttgttcagcctaaagaagagcagacaggatcaacatcttttaaggtatgtttaaaggaaa |
10821790 |
T |
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| Q |
107 |
--ttatggtactttggtctactcttggaaggttgacatctt |
145 |
Q |
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| T |
10821789 |
ttttgtggtacttcaatctactattggaaggttgacatctt |
10821749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 36145497 - 36145584
Alignment:
| Q |
7 |
aatacctattttgttggaaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtat |
94 |
Q |
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| T |
36145497 |
aatacatattttgtcggaaatgctccgatggcccatattgttgttcagcctaaagaagagcagacaggatcaacatcttttaaggtat |
36145584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 10821612 - 10821576
Alignment:
| Q |
241 |
attatacttgctcattttttcctttgctgaaatcttc |
277 |
Q |
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| T |
10821612 |
attatacttgctcattctttcctttgcttaaatcttc |
10821576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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