View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_37 (Length: 288)
Name: NF7523_low_37
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 9471100 - 9470836
Alignment:
| Q |
19 |
gtgtcttgtaatgataatgacatcaaaatctgctcacttagtttccaattcacctgcaaacattcaaaaatatcaacagtttgagagacacatgtgtgtt |
118 |
Q |
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| T |
9471100 |
gtgtcttgtaatgataatgacatcaaaatatgctcacttagtttccaattcacctgcaaacattcaaaaatatcaacagtttgagagacacatgtgtgtt |
9471001 |
T |
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| Q |
119 |
tatattaacagatataactaaacattataatgtttcaattttcttc-nnnnnnnntgtttcaatttgaaatctgcatgtcaacttgaacataccaataac |
217 |
Q |
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| T |
9471000 |
tatattaacagatataactaaacattataatgtttcaattttcttcaaaaaaaaatgtttcaatttgaaatctgcatgtcaacttgaacataccaataac |
9470901 |
T |
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| Q |
218 |
tattatgccattcaaaccaacaaacagattgagcagcgtgtatcgctcatcagtggttcttctca |
282 |
Q |
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| T |
9470900 |
tattatgccattcaaaccaacaaacagattgagcagcgtgtatcgctcatcagtggttctactca |
9470836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 53693002 - 53692926
Alignment:
| Q |
25 |
tgtaatgataatgacatcaaaatctgctcacttagtttccaattcacctgcaaacattcaaaaatatcaacagtttga |
102 |
Q |
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|||| |||||||||||||||||||| |||||||| || ||||||||| |||||||||| ||| ||||||||||||||| |
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| T |
53693002 |
tgtattgataatgacatcaaaatcttctcacttaattcccaattcacgtgcaaacatt-aaacatatcaacagtttga |
53692926 |
T |
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