View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_4 (Length: 594)
Name: NF7523_low_4
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 357 - 575
Target Start/End: Original strand, 53740855 - 53741078
Alignment:
| Q |
357 |
atatttgtcagatcgacgaagctgctgatcggtacagttttatggcaaaaatgttagaagcacattggattgaatagagcccactcgatcacagtatata |
456 |
Q |
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| T |
53740855 |
atatttgtcagatcgacgaagctgccgatcggtacagttttatggcaaaaatgttagaagcacattggattgaatagagcccactcgatcacagtatata |
53740954 |
T |
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| Q |
457 |
taagaatggaataaaatttctttcaggcaatgcccgcaaaccaattcatttctctgttcacttccaacaagaaaacattttgaacatgagattgtt---- |
552 |
Q |
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| T |
53740955 |
taagaatggaataaaatttctttcaggcaatgccggcaaaccaattcatttctctgttcacttccaacaagaaaacattttgaacatgagattgttagcg |
53741054 |
T |
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| Q |
553 |
-agtgggaatattattaagttacc |
575 |
Q |
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| T |
53741055 |
aagtgggaatatgattaagttacc |
53741078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 53740648 - 53740806
Alignment:
| Q |
24 |
aacacagttccaattgttgcagaccatgcagtatgtgctatgtagtagcttggagaaaagtccccaaacaaaccctactataattggtcgcatcgactgc |
123 |
Q |
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| T |
53740648 |
aacacaattccaattgctgcagaccatgcagtatgtgctatgtagtagcttggagaaaagtccccaaacaaacccta---taattggtcgcattgactgc |
53740744 |
T |
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| Q |
124 |
aaagctggacatggagcgggtcgtccaacaaagaaaatggtaacaattatggcttcaggttg |
185 |
Q |
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| T |
53740745 |
aaagctggacatggagcgggtcgtccaacaaagaaaatggtaacaattatggtttcaggttg |
53740806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 13854951 - 13854868
Alignment:
| Q |
253 |
ttattaaaagcgagtaatcgcaagatgcgaaaaactcgaggaggaaaagatcaatacaactggcgccgcatatatacgggacac |
336 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||| | |||| || |||||||| |||| |
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| T |
13854951 |
ttattaaatgcgagtaatcgcaagacgcgaaaaactcgaggaggaaaagatcaaaacaatcgacgccacaaatatacggaacac |
13854868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 242 - 336
Target Start/End: Complemental strand, 26042404 - 26042310
Alignment:
| Q |
242 |
aatgacaaatattattaaaagcgagtaatcgcaagatgcgaaaaactcgaggaggaaaagatcaatacaactggcgccgcatatatacgggacac |
336 |
Q |
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|||| ||||||||||||| | | |||||| ||| | ||||||||||||| || |||||| ||||||||| |||||||||||||||||| |||| |
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| T |
26042404 |
aatggcaaatattattaataacaagtaattataaggtacgaaaaactcgagaagaaaaagagcaatacaaccggcgccgcatatatacggaacac |
26042310 |
T |
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