View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_41 (Length: 274)
Name: NF7523_low_41
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 48492240 - 48492480
Alignment:
| Q |
15 |
tatgaaagcaaaagtaccactgagatgaccaacaacgtgattgggaggataaggtgctctgtcacgtaaagctttgtaagcctcaatcaccaaaacaact |
114 |
Q |
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| T |
48492240 |
tatgaaagcaaaagtgccactgagatgaccaacaacgtgattgggaggataaggtgctctgtcacgtaaagctttgtaagcctcaatcaccaaaacaact |
48492339 |
T |
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| Q |
115 |
tcattagctgacttggctagtccatattgttgccttaatctccctaaattgtctagagctccctcaaacatgcagaatatctcatcttttacaccaaaca |
214 |
Q |
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| T |
48492340 |
tcattagctgacttggctagtccatattgttgccttaatctccctaaattgtctagagctccctcaaacatgcagaatatctcatcttttacaccaaaca |
48492439 |
T |
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| Q |
215 |
ttctgccatattccattcaataagatgataaagaaactact |
255 |
Q |
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| T |
48492440 |
ttctgccattttccattcaataagatgataaagaaactact |
48492480 |
T |
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Back To:
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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 7795077 - 7794882
Alignment:
| Q |
5 |
tgtcgaagaatatgaaagcaaaagtaccactgagatgaccaacaacgtgattgggaggataaggtgctctgtcacgtaaagctttgtaagcctcaatcac |
104 |
Q |
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| T |
7795077 |
tgtcgaaaactatgaaagcaaaactaccactaagatggccaacaacatgattagcagggtaaggtgcacgatcgcgtaaagctttgtaagcctcaatcat |
7794978 |
T |
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| Q |
105 |
caaaacaacttcattagctgacttggctagtccatattgttgccttaatctccctaaattgtctagagctccctcaaacatgcagaatatctcatc |
200 |
Q |
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| T |
7794977 |
aagaactacttcatttgcagattttgaaagtccatattgctgtctcaagctccctaaattgtctagagatccttcaaacaagcagaatatctcatc |
7794882 |
T |
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