View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_43 (Length: 260)
Name: NF7523_low_43
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 42663186 - 42662943
Alignment:
| Q |
16 |
atagaaatgagcataggattcttactgaaatagtgtacacatgaaaatgttatcctaaggtattttgcaaatgaacttttaagacatcaatctttgacaa |
115 |
Q |
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| T |
42663186 |
atagaaatgagcataggattcttactgaaatagtgtacacatgaaaatgttatcctaaggtattt-gcaaatgaacttttaagacatcaatctttgacaa |
42663088 |
T |
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| Q |
116 |
gttatcttacttattctgttattcagcatcttccaattccaattgtgaaaagcaattttgatgttggaaaagatttctgatcacccattttaaatctgtt |
215 |
Q |
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| T |
42663087 |
gttatcttacttattctgttattcagcatcttccaattccaattgtgaaaagcaattttgatgttggaaaagatttctgatcacccattttaaatctgtt |
42662988 |
T |
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| Q |
216 |
tgttacagtatttttatgnnnnnnnnttcacttatttttcatttt |
260 |
Q |
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| T |
42662987 |
tggtacagtatttttatgaaaaaaaattcacttatttttcatttt |
42662943 |
T |
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