View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7523_low_47 (Length: 252)
Name: NF7523_low_47
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_47 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 1059680 - 1059448
Alignment:
| Q |
13 |
aatattatgggaattaaaagttaaagaacttttgaatatagggttcttttattcttattcaaactgttataagatgaagcatgttatttatttcaataca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1059680 |
aatattatgggaattaaaagttaaagaaattttgaatatagggttcttttattcttattcaaactattataagatgaagcatgttatttatttcaataca |
1059581 |
T |
|
| Q |
113 |
acatggtttatataaagtttaaagatgtaaaatagggtttacgtcctattatcnnnnnnnnnnnctttcattacttcattttgtgcttaagaattaactt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1059580 |
acatggtttatataaagtttaaagatgtaaaatagggtttacgtcctattatcttaatttt----tttcattacttcattttgtgcttaagaattaactt |
1059485 |
T |
|
| Q |
213 |
cttatgattattatgtagatataaattatataatatacct |
252 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1059484 |
cttatg---attatgtagatataaattatataatatacct |
1059448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University