View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_5 (Length: 568)
Name: NF7523_low_5
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 25 - 554
Target Start/End: Complemental strand, 42325971 - 42325443
Alignment:
| Q |
25 |
tttgatttgtcatctaatgtaacatgactaacatgaaacattcctgagggactagctagttgaaatgaacagaaccaaaccaatatcaagagtggtggga |
124 |
Q |
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| T |
42325971 |
tttgatttgtcatctaatgtaacatgactaacatgaaacattcctgagggactagctagttgaaatgaacagaaccaaaccaatatcaagagtggtggga |
42325872 |
T |
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| Q |
125 |
gcacctgaacctgtatttttacaccctatagaatccctcttttctatagatctaattaaattatatcttgcatgtaacatatttaaaatgggaaaaataa |
224 |
Q |
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| T |
42325871 |
gcacctgaacctgtatttttacaccctatagaatccctcttttctatagatctaattaaattatatcttgcatgtaacatatttaaaatgggaaaaataa |
42325772 |
T |
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| Q |
225 |
cacttaaccttgaaagatacttttaagacaatataaataagaagctcaacataactccttttcctcaacaagaagagttatctgagttgtactcttaagt |
324 |
Q |
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| T |
42325771 |
cacttaaccttgaaagatacttttaagacaatataaataagaagctcaacataactcc-tttcctcaacaagaagaattatctgagttgtactcttaagt |
42325673 |
T |
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| Q |
325 |
ttccactcaactttcttttctctttttcactcttttgtgaaatggcaagaatgtctcaagaaccactcattgttggaagagtgataggagaagttcttga |
424 |
Q |
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| T |
42325672 |
ttccactcaaatttcttttctctttttcactcttttgtgaaatggcaagaatgtctcaagaaccactcattgttggaagagtgataggagaagttcttga |
42325573 |
T |
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| Q |
425 |
ttcctttaccacaagcatgaaaatgactgtgagttacaacaagaagcaagtcttcaatggccatgagtttttcccttccactatcaacaccaaacccaaa |
524 |
Q |
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| T |
42325572 |
ttcctttaccacaagcatgaaaatgactgtgagttacaacaagaagcaagtcttcaatggccatgagtttttcccttccactatcaacaccaaacccaaa |
42325473 |
T |
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| Q |
525 |
gttgagattgatggtggtgacatgatgtcc |
554 |
Q |
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| T |
42325472 |
gttgagattgatggtggtgacatgaggtcc |
42325443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 549
Target Start/End: Complemental strand, 36278975 - 36278867
Alignment:
| Q |
441 |
atgaaaatgactgtgagttacaacaagaagcaagtcttcaatggccatgagtttttcccttccactatcaacaccaaacccaaagttgagattgatggtg |
540 |
Q |
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||||||||| |||| | |||||||| |||||||| | |||||| ||||||||||| |||||| | | | ||| ||||| |||||| ||||| |||||| |
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| T |
36278975 |
atgaaaatgtctgtcacttacaacactaagcaagtttacaatggtcatgagttttttccttcctcagttaccactaaacctaaagttcagattcatggtg |
36278876 |
T |
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| Q |
541 |
gtgacatga |
549 |
Q |
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|||| |||| |
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| T |
36278875 |
gtgatatga |
36278867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 484
Target Start/End: Complemental strand, 26206592 - 26206495
Alignment:
| Q |
387 |
ccactcattgttggaagagtgataggagaagttcttgattcctttaccacaagcatgaaaatgactgtgagttacaacaagaagcaagtcttcaatgg |
484 |
Q |
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||||| ||| |||| |||||||||||||| ||| |||| | |||||| ||| || ||||||||||||| ||||||||| || || |||||||||| |
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| T |
26206592 |
ccactaattcttgggagagtgataggagatgttattgactattttaccccaaccacaaaaatgactgtgacttacaacaacaaagaaatcttcaatgg |
26206495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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