View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_52 (Length: 245)
Name: NF7523_low_52
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 37081446 - 37081664
Alignment:
| Q |
16 |
gaaacatagtgtttccttcaacattttccagtgccacaaatttaaataggttctccccatttgatctttccacatagtttttcaatcttttagtgtactc |
115 |
Q |
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| T |
37081446 |
gaaacatagtgtttccttcaacattttccagtgccacaaattttaataggttctccccatttgatctttccacatagtttttcaatcttttagtgtactc |
37081545 |
T |
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| Q |
116 |
taaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgagatgtgtccacctcttgcagcaacatgtaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37081546 |
taaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcttttcaacgattgagatgtgtccacctcttgcagcaatatgtaac |
37081645 |
T |
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| Q |
216 |
gcactatcgttgttttcat |
234 |
Q |
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||||| ||||||||||||| |
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| T |
37081646 |
gcactctcgttgttttcat |
37081664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 234
Target Start/End: Original strand, 37071784 - 37071913
Alignment:
| Q |
105 |
ttagtgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgagatgtgtccacctcttgcag |
204 |
Q |
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|||||||| ||||||||||| ||| |||||||| ||||||||| ||||||||| ||| ||||||| |||||||||||||||||||||||| |||||||| |
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| T |
37071784 |
ttagtgtattctaaccatgctgttcttatatcacgccgttcaatattagcatatgctttcaatagcttttcaacgattgagatgtgtccacatcttgcag |
37071883 |
T |
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| Q |
205 |
caacatgtaacgcactatcgttgttttcat |
234 |
Q |
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| T |
37071884 |
caatatgtaacgcactctcattgttttcat |
37071913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 36952441 - 36952315
Alignment:
| Q |
105 |
ttagtgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgagatgtgtccacctcttgcag |
204 |
Q |
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| T |
36952441 |
ttagtgtattctaaccatgccatttttatatcatgccgttcaatattagcataacttgctaatagctttttaacggtttggatgtgtccacctcttgcag |
36952342 |
T |
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| Q |
205 |
caacatgtaacgcactatcgttgtttt |
231 |
Q |
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| T |
36952341 |
caacatgtaaggcactatcattgtttt |
36952315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 232
Target Start/End: Complemental strand, 36934971 - 36934848
Alignment:
| Q |
109 |
tgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgagatgtgtccacctcttgcagcaac |
208 |
Q |
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| T |
36934971 |
tgtactctaaccatgccatttttatctcactccgttcaatattagcataacttgctaatagcttttcaacggttgagatgtgtccatatctagcagcaac |
36934872 |
T |
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| Q |
209 |
atgtaacgcactatcgttgttttc |
232 |
Q |
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|||||| |||||||| |||||||| |
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| T |
36934871 |
atgtaaggcactatcattgttttc |
36934848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 36946532 - 36946410
Alignment:
| Q |
109 |
tgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgagatgtgtccacctcttgcagcaac |
208 |
Q |
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|||| |||||||||||| ||||||||||| ||||||||| ||||| |||| ||| ||||| ||| |||| |||||||||||||||||||||||||||| |
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| T |
36946532 |
tgtattctaaccatgccatttttatatcacgccgttcaatattagtataacttgctaatagtgttttaacggttgagatgtgtccacctcttgcagcaac |
36946433 |
T |
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| Q |
209 |
atgtaacgcactatcgttgtttt |
231 |
Q |
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|||||| | ||||| ||||||| |
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| T |
36946432 |
atgtaaggggctatcattgtttt |
36946410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 36963855 - 36963733
Alignment:
| Q |
109 |
tgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgagatgtgtccacctcttgcagcaac |
208 |
Q |
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|||| |||||||||||| ||||||||||| ||||||||| ||||| |||| ||| ||||| ||| |||| |||||||||||||||||||||||||||| |
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| T |
36963855 |
tgtattctaaccatgccatttttatatcacgccgttcaatattagtataacttgctaatagtgttttaacggttgagatgtgtccacctcttgcagcaac |
36963756 |
T |
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| Q |
209 |
atgtaacgcactatcgttgtttt |
231 |
Q |
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|||||| | ||||| ||||||| |
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| T |
36963755 |
atgtaaggggctatcattgtttt |
36963733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 12495592 - 12495720
Alignment:
| Q |
103 |
ttttagtgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcatttcaacgattgagatgtgtccacctcttgc |
202 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||| ||| ||||| ||| | |||| |||||||| |||| ||||||||||| |||| |
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| T |
12495592 |
ttttagtgtattctaaccatgccatttttatatcatgccgttcaatattcacataatttgctagtagcttttcaacggttgaaatgtgtccaccatttgc |
12495691 |
T |
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| Q |
203 |
agcaacatgtaacgcactatcgttgtttt |
231 |
Q |
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||||||||| || |||||||| ||||||| |
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| T |
12495692 |
agcaacatgaaatgcactatcattgtttt |
12495720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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