View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7523_low_53 (Length: 241)

Name: NF7523_low_53
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7523_low_53
NF7523_low_53
[»] chr6 (7 HSPs)
chr6 (1-223)||(29144218-29144438)
chr6 (3-218)||(23216881-23217094)
chr6 (1-52)||(21379350-21379401)
chr6 (27-70)||(29123229-29123272)
chr6 (6-52)||(21375263-21375309)
chr6 (3-71)||(29149777-29149845)
chr6 (3-79)||(32745768-32745844)
[»] scaffold0134 (1 HSPs)
scaffold0134 (5-151)||(17165-17309)
[»] chr4 (3 HSPs)
chr4 (8-79)||(9603473-9603544)
chr4 (1-70)||(9568307-9568376)
chr4 (1-79)||(54295965-54296043)
[»] chr5 (2 HSPs)
chr5 (1-79)||(42782260-42782338)
chr5 (6-79)||(27174383-27174456)
[»] chr2 (2 HSPs)
chr2 (13-53)||(7436176-7436216)
chr2 (13-53)||(7525002-7525042)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29144438 - 29144218
Alignment:
Q  1 tacgaacgcatccaaatcgcttcaaggatttaagaggcaatttcgatagaatgaataaggcaatatcatcgagtatatatagtttctcacctttcccttt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  29144438 tacgaacgcatccaaatcgcttcaaagatttaagaggcaatttcgatagaatggataaggcaatatcatcgagtatata--gtttctcacctttcccttt 29144341  T
Q  101 gttgcaaacacagttttcttatccattgcaaatcgcaattgttgatctgcgaattcacccgtgcacacgtaattccactctcctttatctcacgcaaaat 200  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29144340 gttgcaaacacagttttctcatccattgcaaatcgcaatcgttgatctgcgaattcacccgtgcacacgtaattccactctcctttatctcacgcaaaat 29144241  T
Q  201 taattagtttcgagagcagtggt 223  Q
     ||||||||||||||||||||||    
T  29144240 gaattagtttcgagagcagtggt 29144218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 23216881 - 23217094
Alignment:
Q  3 cgaacgcatccaaatcgcttcaaggatttaagaggcaatttcgatagaatgaataaggcaatatcatcgagtatatatagtttctcacctttccctttgt 102  Q
    ||||| ||| |||||| |||||| ||||||||||| || |||||||||||| |||||   ||||| ||  |  ||||||||||||||||||| | |||||    
T  23216881 cgaacacattcaaatctcttcaaagatttaagaggtaacttcgatagaatggataagcttatatcgtcagg--tatatagtttctcaccttttcatttgt 23216978  T
Q  103 tgcaaacacagttttcttatccattgcaaatcgcaattgttgatctgc-gaattcacccgtgcacacgtaattccactctcctttatctcacgcaaaatt 201  Q
    || || ||  |||||||| ||| |||||||| |||| ||| ||||||| || ||||||| | |||||| |||||||||||||| | |||||| | || |     
T  23216979 tgaaaccattgttttcttctccgttgcaaattgcaagtgtagatctgcggatttcacccctacacacgaaattccactctcctctgtctcactc-aagtg 23217077  T
Q  202 aattagtttcgagagca 218  Q
    |||| ||||||||||||    
T  23217078 aattggtttcgagagca 23217094  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21379350 - 21379401
Alignment:
Q  1 tacgaacgcatccaaatcgcttcaaggatttaagaggcaatttcgatagaat 52  Q
    |||| |||||||||||||||||||| ||||||||||| || |||||||||||    
T  21379350 tacggacgcatccaaatcgcttcaaagatttaagaggtaacttcgatagaat 21379401  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 29123272 - 29123229
Alignment:
Q  27 gatttaagaggcaatttcgatagaatgaataaggcaatatcatc 70  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||    
T  29123272 gatttaagaggcaattttgatagaatggagaaggcaatatcatc 29123229  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 21375263 - 21375309
Alignment:
Q  6 acgcatccaaatcgcttcaaggatttaagaggcaatttcgatagaat 52  Q
    ||||||||||||| |||||| ||||||||||  ||||||||||||||    
T  21375263 acgcatccaaatcacttcaaagatttaagagataatttcgatagaat 21375309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 29149777 - 29149845
Alignment:
Q  3 cgaacgcatccaaatcgcttcaaggatttaagaggcaatttcgatagaatgaataaggcaatatcatcg 71  Q
    ||||||||| ||||||  || || ||||||||||||||||| || |||||| | ||||| |||||||||    
T  29149777 cgaacgcattcaaatcagttaaaagatttaagaggcaattttgagagaatggagaaggctatatcatcg 29149845  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 32745768 - 32745844
Alignment:
Q  3 cgaacgcatccaaatcgcttcaaggatttaagaggcaatttcgatagaatgaataaggcaatatcatcgagtatata 79  Q
    ||||||||| ||||||| || || ||||||||||| | ||| ||||| ||| | ||||||||||||||  |||||||    
T  32745768 cgaacgcattcaaatcgtttaaaagatttaagaggtagttttgataggatggagaaggcaatatcatcaggtatata 32745844  T

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Target: scaffold0134 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 17165 - 17309
Alignment:
Q  5 aacgcatccaaatcgcttcaaggatttaagaggcaatttcgatagaatgaataaggcaatatcatcgagtatatatagtttctcacctttccctttgttg 104  Q
    ||||||| |||||| |||||| |||||||||||||| || ||||||||| |||||  |||||| ||  |  |||| ||||||||||||||   |||||||    
T  17165 aacgcattcaaatctcttcaaagatttaagaggcaactttgatagaatggataagctaatatcgtcagg--tataaagtttctcacctttttatttgttg 17262  T
Q  105 caaacacagttttcttatccattgcaaatcgcaattgttgatctgcg 151  Q
     || ||  |||||||| ||| |||||||| |||| ||| ||||||||    
T  17263 aaaccattgttttcttctccgttgcaaattgcaagtgtagatctgcg 17309  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 9603473 - 9603544
Alignment:
Q  8 gcatccaaatcgcttcaaggatttaagaggcaatttcgatagaatgaataaggcaatatcatcgagtatata 79  Q
    |||| |||||||||| || ||||||||||||||||| ||||||||| | ||||||||||||||  |||||||    
T  9603473 gcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatata 9603544  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 9568376 - 9568307
Alignment:
Q  1 tacgaacgcatccaaatcgcttcaaggatttaagaggcaatttcgatagaatgaataaggcaatatcatc 70  Q
    ||||||||||| |||||||||| |  ||||||| ||||||||| ||||||||  | ||||||||||||||    
T  9568376 tacgaacgcattcaaatcgcttaatagatttaaaaggcaatttggatagaatagagaaggcaatatcatc 9568307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 54295965 - 54296043
Alignment:
Q  1 tacgaacgcatccaaatcgcttcaaggatttaagaggcaatttcgatagaatgaataaggcaatatcatcgagtatata 79  Q
    ||||||||||| ||||||| || || ||||||||||||| ||| |||| |||| | |||| |||||||||  |||||||    
T  54295965 tacgaacgcattcaaatcgtttaaaagatttaagaggcagttttgataaaatggagaaggaaatatcatcaggtatata 54296043  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 42782338 - 42782260
Alignment:
Q  1 tacgaacgcatccaaatcgcttcaaggatttaagaggcaatttcgatagaatgaataaggcaatatcatcgagtatata 79  Q
    |||| |||||||||||||||||||| |||||||  || ||||| ||||||||  | |||| |||||||||  |||||||    
T  42782338 tacgtacgcatccaaatcgcttcaaagatttaatcggtaattttgatagaattgagaaggtaatatcatcatgtatata 42782260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 27174383 - 27174456
Alignment:
Q  6 acgcatccaaatcgcttcaaggatttaagaggcaatttcgatagaatgaataaggcaatatcatcgagtatata 79  Q
    |||||||||||||||||||| ||||| ||||| ||||| |||||| |  | |||| |||||||||  |||||||    
T  27174383 acgcatccaaatcgcttcaaagatttcagaggtaattttgatagatttgagaaggtaatatcatcatgtatata 27174456  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 7436176 - 7436216
Alignment:
Q  13 caaatcgcttcaaggatttaagaggcaatttcgatagaatg 53  Q
    ||||||||||||| |||||||||||||| || |||||||||    
T  7436176 caaatcgcttcaaagatttaagaggcaaatttgatagaatg 7436216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 7525002 - 7525042
Alignment:
Q  13 caaatcgcttcaaggatttaagaggcaatttcgatagaatg 53  Q
    ||||||||| ||| ||||||||||||||||| |||||||||    
T  7525002 caaatcgctgcaaagatttaagaggcaattttgatagaatg 7525042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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