View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_54 (Length: 240)
Name: NF7523_low_54
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1059432 - 1059208
Alignment:
| Q |
1 |
tggatttggaatggatacggtattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaaccaaagtcttcttcataccaac |
100 |
Q |
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| T |
1059432 |
tggatttggaatggatacggtattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaaccaaagtcttcttcataccaac |
1059333 |
T |
|
| Q |
101 |
taattctgatgtaacactgttgaaaatctccttgtctttccctgtggttttccaatatccagtgtttgttgctctattagttctcacacctgttggatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1059332 |
taattctgatgtaacactgttgaaaatctccttgtctttccctgtggttttccaatatccagtgtttgttgctctattagttctcacacctgttggatat |
1059233 |
T |
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| Q |
201 |
ttacgatctcttagactgaagaagt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
1059232 |
ttacgatctcttagactgaagaagt |
1059208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 50580362 - 50580572
Alignment:
| Q |
1 |
tggatttggaatggatacggtattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaaccaaagtcttcttcataccaac |
100 |
Q |
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| T |
50580362 |
tggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaac |
50580461 |
T |
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| Q |
101 |
taattctgatgtaacactgttgaaaatctccttgtctttccctgtggttttccaatatccagtgtttgttgctctattagttctcacacctgttggatat |
200 |
Q |
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| T |
50580462 |
caactccgatgtaacactgtcgaagatttctctgtctttccctgtggtcttccagtatccggtgtttgttgctcgattcgttctcacaccggttggatat |
50580561 |
T |
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| Q |
201 |
ttacgatctct |
211 |
Q |
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||||||||||| |
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| T |
50580562 |
ttacgatctct |
50580572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 10317623 - 10317701
Alignment:
| Q |
22 |
attcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaaccaaagtcttcttcataccaac |
100 |
Q |
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|||||||||| ||||| ||||||||||||||||| ||||| | |||||| || || || | ||| |||||||||||||| |
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| T |
10317623 |
attcatgcatgacccaattggttttctctcctcttggagctctacctttatagaacacaagagttttcttcataccaac |
10317701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 32991173 - 32991095
Alignment:
| Q |
124 |
aaatctccttgtctttccctgtggttttccaatatccagtgtttgttgctctattagttctcacacctgttggatattt |
202 |
Q |
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||||||| |||||||| ||||| | |||||| || |||| | ||||||||||| ||||||| ||||||||||||||| |
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| T |
32991173 |
aaatctctttgtcttttcctgtagctttccagtaaccagattcagttgctctatttgttctcatacctgttggatattt |
32991095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 2924837 - 2924753
Alignment:
| Q |
20 |
gtattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaaccaaagtcttcttcataccaactaat |
104 |
Q |
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|||||||||||| |||||||||| ||| || ||||| ||||| | |||||||| |||||||| || || ||||| |||| |||| |
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| T |
2924837 |
gtattcatgcatgacccagttggatttttcacctctcggagctcttcctttgtagaaaaccaatgtttttttcatcccaattaat |
2924753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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