View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_59 (Length: 223)
Name: NF7523_low_59
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 40818522 - 40818333
Alignment:
| Q |
18 |
agagcttacagatacatacaaccatgactaagtcaatttcaacactgccaaaaacaacgccaatatatgcaccaacgtagacgacaaaatcaaattcgtt |
117 |
Q |
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| T |
40818522 |
agagcttacggatacatacaaccatgactaagtcaatttcaacactgccaaaaacaacgccaatatatgcaccaacgtagatgacagaatcaaattcgtt |
40818423 |
T |
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| Q |
118 |
aatcagagactaaccagcctaggagcgctgcaaaattagtt-ttttaatgcatgtattcgtcgaacctggatcctccacaaccggtttat |
206 |
Q |
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| T |
40818422 |
aatcagagactaaccagcctaggagcgctgcaaaattagttttttttatgcatgtattcgacgaacctggatcctccacaactggtttat |
40818333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 31750175 - 31750090
Alignment:
| Q |
28 |
gatacatacaaccatgactaagtcaatttcaacactgccaaaaacaacgccaatatatgcaccaacgtagacgacaaaatcaaatt |
113 |
Q |
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| T |
31750175 |
gatacatactgctatgactaagccaatttcaacactgccaaagacaacgcccatatacgcgctaatgcagacgaaaaaatcgaatt |
31750090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 38215737 - 38215780
Alignment:
| Q |
46 |
taagtcaatttcaacactgccaaaaacaacgccaatatatgcac |
89 |
Q |
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| T |
38215737 |
taagccaatttcaacactgccaaaaacaactccaaaatatgcac |
38215780 |
T |
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