View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_6 (Length: 532)
Name: NF7523_low_6
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_6 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Complemental strand, 24423277 - 24422777
Alignment:
| Q |
16 |
atctagtatcagattctctactttgaaggatgataacttctagaa-tggtcccatttggcttgcagggaactaacatagtaacaaatcctgatctcaata |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24423277 |
atctagtatcagattctctactttgaaggatgataacttctagaaatggtcccatttggcatgcagggaactaacatagtaacaaatcctgatctcaata |
24423178 |
T |
|
| Q |
115 |
ttaggcctagttgttctaaaaccgttggatatgtggagtatggcttgtagacagggcaatggacggagagctaagctagcatagcgttgcgaataaacat |
214 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24423177 |
ttagtcctagttgttctaaaaccgttggatatgtggagtatggctcgtagacagggcaatggacggagagctaagctagcatagcgttgcgaataaacat |
24423078 |
T |
|
| Q |
215 |
acttggccgaactacgtaaacaaacgatggtgttccattgtttacgactttgtttgtctattcttcttttactagttgttgatctaacacgatagaccag |
314 |
Q |
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| T |
24423077 |
acttggccgaactacgtaaacaaacgatggtgttccattgtttacgactttgtttgtctattcttcttttactagttgttgatctaacacgatagaccag |
24422978 |
T |
|
| Q |
315 |
taaaattggtcgaaatccgtgatctaacatccccaaaatcagcttgggggaagaccttaaaagttctagaaattaggccattgagttcctattaattaga |
414 |
Q |
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| T |
24422977 |
taaaattggtcgaaatccgtgatctaacatccccaaaatcagcttggggggagaccttaaaagttcgagaaattaggccattgagttcctattaattaga |
24422878 |
T |
|
| Q |
415 |
agtgacataaaccaaatgaaattccattcaatcactttgaagttaatctcaacaccagatgtggcccaactgaataaagttgttgcttttaggccaaaga |
514 |
Q |
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| T |
24422877 |
agtgacataaaccaaatgaaattccattcaatcactttgaagttaatctcaacaccagatgtggtccaactgaataaagttgttgcttttaggccaaaga |
24422778 |
T |
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| Q |
515 |
t |
515 |
Q |
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| T |
24422777 |
t |
24422777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 16 - 508
Target Start/End: Original strand, 24410768 - 24411261
Alignment:
| Q |
16 |
atctagtatcagattctctactttgaaggatgataacttctagaa-tggtcccatttggcttgcagggaactaacatagtaacaaatcctgatctcaata |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24410768 |
atctagtatcagattctctactttgaaggatgataacttctagaaatggtcccatttggcatgcagggaactaacatagtaacaaatcctgatctcaata |
24410867 |
T |
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| Q |
115 |
ttaggcctagttgttctaaaaccgttggatatgtggagtatggcttgtagacagggcaatggacggagagctaagctagcatagcgttgcgaataaacat |
214 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24410868 |
ttagtcctagttgttctaaaaccgttggatatgtggagtatggctcgtagacagggcaatggacggagagctaagctagcatagcgttgcgaataaacat |
24410967 |
T |
|
| Q |
215 |
acttggccgaactacgtaaacaaacgatggtgttccattgtttacgactttgtttgtctattcttcttttactagttgttgatctaacacgatagaccag |
314 |
Q |
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| T |
24410968 |
acttggccgaacttcgtaaacaaacgatggtgttccattgtttacgactttgtttgtctattcttcttttactagttgttgatctaacacgatagaccag |
24411067 |
T |
|
| Q |
315 |
taaaattggtcgaaatccgtgatctaacatccccaaaatcagcttgggggaagaccttaaaagttctagaaattaggccattgagttcctattaattaga |
414 |
Q |
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| T |
24411068 |
taaaattggccgaaatccgtgatctaacatccccaaaatcagcttggggggagaccttaaaagttcgagaaattaggccattgagttcctattaattaga |
24411167 |
T |
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| Q |
415 |
agtgacataaaccaaatgaaattccattcaatcactttgaagttaatctcaacaccagatgtggcccaactgaataaagttgttgcttttaggc |
508 |
Q |
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| T |
24411168 |
agtgacataaaccaaatgaaattccattcaatcactttgaaggtaatctcaacaccagatgtggcccaactgaataaagttgttgcttttaggc |
24411261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 36996 - 37085
Alignment:
| Q |
215 |
acttggccgaactacgtaaacaaacgatggtgttccattgtttacgactttg--tttgtctattcttcttttactagttgttgatctaaca |
303 |
Q |
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||||| ||||||| |||||||||| || |||||||||||||| ||| |||| ||| | ||||||||||||||||||| ||| ||||||| |
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| T |
36996 |
acttgaccgaactgtgtaaacaaacaattgtgttccattgttttcga-tttgcatttctttattcttcttttactagttattgttctaaca |
37085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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