View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_60 (Length: 216)
Name: NF7523_low_60
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_60 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 43178700 - 43178503
Alignment:
| Q |
19 |
cctcaaactccttaactcttaactcaaacccgctgaaaaatcttagtaactaacaaatgcaagttaaccaagccctttcaaaatgcttaggaagagaata |
118 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43178700 |
cctcaaactccttaactcttaactcaaatccgccgaaaaatcttagtaactaacaaatgcaagttaaccaagccctttctaaatgcttaggaagagaata |
43178601 |
T |
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| Q |
119 |
tcgtttactgatgcaggtccaaaagacatttcttggctcatcatcatgtcctttggaggccccaattcagcatcaacctgtgttactgttaacgatgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43178600 |
tcgtttactgatgcaggtccaaaagacatttcttgggtcatcatcatgtcctttggaggccccaattcagcatcaacctgtgttactgttaactatgc |
43178503 |
T |
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