View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_62 (Length: 208)
Name: NF7523_low_62
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 54794483 - 54794309
Alignment:
| Q |
19 |
taaactattgccaaatagatactacagaatagagtgtgaataaactgaaccaagtcacacccttgactcatttatgggaaccaatcatttcattgttcat |
118 |
Q |
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| T |
54794483 |
taaactattgccaaatagatactacagaatagagtgtgaataaactgaaccaagtcacacccttgactcatttatgggaaccaatcatttcattgttcat |
54794384 |
T |
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| Q |
119 |
nnnnnnnnnnncccgtagagtagattgttgtattgaattaaaatgcactattaagctattaactaattagatatt |
193 |
Q |
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| T |
54794383 |
aaaaaaaaaaaaccgtagagtagattgttgtattgaattaaaatgcactattaagctattaactaattagatatt |
54794309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 52287181 - 52287018
Alignment:
| Q |
19 |
taaactattgccaaatagatactacagaatagagtgtgaataaactgaaccaagtcacacccttgactcatttatgggaaccaatcatttcattgttcat |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52287181 |
taaactattgccaaatagatactacagaatggagtgtgaataaactgacccaagtcacacccttgactcatttatggaaaccaatcatttcattgttcat |
52287082 |
T |
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| Q |
119 |
nnnnnnnnnnncccgtagagtagattgttgtattgaattaaaatgcactattaagctattaactaatta |
187 |
Q |
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| T |
52287081 |
aaaaaaat-----catagaatagattgatgtattgaattaaaatgcactattaagctattaactaatta |
52287018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 802316 - 802251
Alignment:
| Q |
46 |
aatagagtgtgaataaactgaaccaagtcacacccttgactcatttatgggaaccaatcatttcat |
111 |
Q |
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| T |
802316 |
aatagaatgtgaataacttgacccaagtcatacccttaactcaattatggaaaccaatcatttcat |
802251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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