View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7523_low_7 (Length: 511)

Name: NF7523_low_7
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7523_low_7
NF7523_low_7
[»] chr5 (8 HSPs)
chr5 (19-495)||(29587635-29588111)
chr5 (70-116)||(13398351-13398397)
chr5 (62-112)||(10517655-10517705)
chr5 (71-105)||(27249570-27249604)
chr5 (82-124)||(38685298-38685340)
chr5 (53-106)||(30271679-30271732)
chr5 (67-107)||(27976380-27976420)
chr5 (52-92)||(34806154-34806194)
[»] chr6 (12 HSPs)
chr6 (52-116)||(2468480-2468544)
chr6 (67-126)||(4240911-4240970)
chr6 (65-115)||(5663937-5663987)
chr6 (72-122)||(32920990-32921040)
chr6 (72-117)||(32931497-32931542)
chr6 (70-118)||(34443049-34443097)
chr6 (86-117)||(21889307-21889338)
chr6 (72-123)||(31579775-31579826)
chr6 (69-106)||(8427749-8427786)
chr6 (77-118)||(32862762-32862803)
chr6 (72-100)||(10174708-10174736)
chr6 (74-114)||(34406440-34406480)
[»] chr4 (11 HSPs)
chr4 (52-116)||(27131680-27131744)
chr4 (58-116)||(25260527-25260585)
chr4 (67-117)||(22402386-22402436)
chr4 (67-116)||(1678677-1678726)
chr4 (62-114)||(31215034-31215086)
chr4 (53-111)||(32754601-32754659)
chr4 (76-114)||(41052607-41052645)
chr4 (73-111)||(51238012-51238050)
chr4 (67-116)||(2802094-2802143)
chr4 (72-116)||(21606601-21606645)
chr4 (62-118)||(31201830-31201886)
[»] chr8 (8 HSPs)
chr8 (71-118)||(16330988-16331035)
chr8 (58-123)||(28478048-28478113)
chr8 (71-114)||(3943757-3943800)
chr8 (62-113)||(28616588-28616639)
chr8 (71-113)||(9581881-9581923)
chr8 (52-94)||(10319307-10319349)
chr8 (71-116)||(29651630-29651675)
chr8 (69-102)||(30671481-30671514)
[»] chr1 (6 HSPs)
chr1 (73-118)||(16567303-16567348)
chr1 (71-118)||(33318847-33318894)
chr1 (71-123)||(2445448-2445500)
chr1 (65-115)||(10042292-10042342)
chr1 (53-107)||(24127603-24127657)
chr1 (65-113)||(40494258-40494306)
[»] chr3 (7 HSPs)
chr3 (70-126)||(1116399-1116455)
chr3 (52-106)||(31652436-31652490)
chr3 (79-123)||(18405035-18405080)
chr3 (71-116)||(42065123-42065168)
chr3 (64-101)||(45028351-45028388)
chr3 (72-116)||(20167629-20167673)
chr3 (71-115)||(35335608-35335652)
[»] chr2 (10 HSPs)
chr2 (58-118)||(5453704-5453764)
chr2 (61-107)||(11496009-11496055)
chr2 (74-126)||(8733552-8733605)
chr2 (59-123)||(31095138-31095202)
chr2 (75-123)||(39941300-39941348)
chr2 (60-106)||(22556234-22556280)
chr2 (65-123)||(43886595-43886652)
chr2 (70-106)||(15804120-15804156)
chr2 (60-88)||(32199512-32199540)
chr2 (69-113)||(32915855-32915899)
[»] chr7 (2 HSPs)
chr7 (72-114)||(438688-438730)
chr7 (57-98)||(43434507-43434548)


Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 495
Target Start/End: Original strand, 29587635 - 29588111
Alignment:
Q  19 tctacttccttttcagctattatgaagtattggcactgtcacgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgtca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29587635 tctacttccttttcagctattatgaagtattggcactgtcacgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatatgtca 29587734  T
Q  119 atgtcagaggtgggtctcgcctttaatatgaagtgtcagtactacatagctaaggttatatcctcaagatgaagtactttcttgatcattcatatgtact 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29587735 atgtcagaggtgggtctcgcctttaatatgaagtgtcagtactacatagctaaggtcatatcctcaagatgaagtactttcttgatcattcatatgtact 29587834  T
Q  219 atgtcggtaaccttatcagtttctccttctagttcagataaagccatggtttgattatttttgtgcaattcttcgtcagccacttcatttttgtccatct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29587835 atgtcggtaaccttatcagtttctccttctagttcagataaagccatggtttgattatttttgtgcaattcttcgtcagccacttcatttttgtccatct 29587934  T
Q  319 tgtcagattctcctaatgtgtcttcagaattggttacttcattgaccattggtagtgaaggatcttgagagatgtcacctttgtctgactgatccttttc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29587935 tgtcagattctcctaatgtgtcttcagaattggttacttcattgaccattggtagtgaaggatcttgagagatgtcacctttgtctgactgatccttttc 29588034  T
Q  419 aatgtgatctttaaccacttggtttgattcaccttttaaatagttctcttcttttgagctatgattttcggtttgat 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29588035 aatgtgatctttaaccacttggtttgattcaccttttaaatagttctcttcttttgagctatgattttcggtttgat 29588111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 13398351 - 13398397
Alignment:
Q  70 ggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgt 116  Q
    ||||||||||||||||||| |||||||||||||||| ||| ||||||    
T  13398351 ggtaataatttaagaaaatagaagtgattaaatgtagccatatgtgt 13398397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 10517655 - 10517705
Alignment:
Q  62 taaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacat 112  Q
    |||||| ||||||||||| |||| |||||||||||||||||| ||| ||||    
T  10517655 taaacatcggtaataattgaagataatggaagtgattaaatgcaactacat 10517705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 27249570 - 27249604
Alignment:
Q  71 gtaataatttaagaaaatggaagtgattaaatgta 105  Q
    ||||||||||| |||||||||||||||||||||||    
T  27249570 gtaataatttatgaaaatggaagtgattaaatgta 27249604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 38685340 - 38685298
Alignment:
Q  82 agaaaatggaagtgattaaatgtaaccacatgtgtcaatgtca 124  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||    
T  38685340 agaaaatggaagtaattgaatgtaaccacatgtgtcagtgtca 38685298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 30271679 - 30271732
Alignment:
Q  53 actgtcacgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaa 106  Q
    |||| |||||||||||| ||||| ||||||||| || ||||||||| |||||||    
T  30271679 actgacacgtaaacaccagtaatgatttaagaatatagaagtgattgaatgtaa 30271732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 27976380 - 27976420
Alignment:
Q  67 accggtaataatttaagaaaatggaagtgattaaatgtaac 107  Q
    ||||||||||||||||||||||| |||||||| || |||||    
T  27976380 accggtaataatttaagaaaatgaaagtgattgaacgtaac 27976420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 34806154 - 34806194
Alignment:
Q  52 cactgtcacgtaaacaccggtaataatttaagaaaatggaa 92  Q
    ||||| |||||| |||||| |||||||||||||||||||||    
T  34806154 cactgacacgtagacaccgataataatttaagaaaatggaa 34806194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 2468544 - 2468480
Alignment:
Q  52 cactgtcacgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgt 116  Q
    ||||| |||||| |||  ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  2468544 cactggcacgtagacattggtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgt 2468480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 4240970 - 4240911
Alignment:
Q  67 accggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgtcaatgtcaga 126  Q
    |||| |||||||||||||||||| ||||||| |||||||| | ||||||||| |||||||    
T  4240970 accgttaataatttaagaaaatgaaagtgatgaaatgtaatcgcatgtgtcagtgtcaga 4240911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 5663987 - 5663937
Alignment:
Q  65 acaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtg 115  Q
    ||||| |||||||| | | ||||||||||||||||||||||||||||||||    
T  5663987 acaccagtaataatatgataaaatggaagtgattaaatgtaaccacatgtg 5663937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 32921040 - 32920990
Alignment:
Q  72 taataatttaagaaaatggaagtgattaaatgtaaccacatgtgtcaatgt 122  Q
    ||||||||||||||||| ||||||||| |||||| | ||||||||||||||    
T  32921040 taataatttaagaaaattgaagtgatttaatgtagctacatgtgtcaatgt 32920990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 32931542 - 32931497
Alignment:
Q  72 taataatttaagaaaatggaagtgattaaatgtaaccacatgtgtc 117  Q
    ||||||||||||||||| ||||||||||||| |||| |||||||||    
T  32931542 taataatttaagaaaatagaagtgattaaatataactacatgtgtc 32931497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 34443097 - 34443049
Alignment:
Q  70 ggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgtca 118  Q
    ||||||||||| ||||| || |||||||| |||||||||||||||||||    
T  34443097 ggtaataatttgagaaagtgaaagtgattgaatgtaaccacatgtgtca 34443049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 117
Target Start/End: Original strand, 21889307 - 21889338
Alignment:
Q  86 aatggaagtgattaaatgtaaccacatgtgtc 117  Q
    ||||||||||||||||||||||||||||||||    
T  21889307 aatggaagtgattaaatgtaaccacatgtgtc 21889338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 31579775 - 31579826
Alignment:
Q  72 taataatttaagaaaatggaagtgattaaatgtaaccacatgtgtcaatgtc 123  Q
    ||||| |||||||| ||| |||||||| |||||||||||| |||||||||||    
T  31579775 taatagtttaagaacatgtaagtgattgaatgtaaccacacgtgtcaatgtc 31579826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 8427749 - 8427786
Alignment:
Q  69 cggtaataatttaagaaaatggaagtgattaaatgtaa 106  Q
    ||||||||||||||||||||| || |||||||||||||    
T  8427749 cggtaataatttaagaaaatgaaattgattaaatgtaa 8427786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 32862803 - 32862762
Alignment:
Q  77 atttaagaaaatggaagtgattaaatgtaaccacatgtgtca 118  Q
    ||||||||||||| |||||||| ||||||||||| |||||||    
T  32862803 atttaagaaaatgaaagtgattgaatgtaaccacgtgtgtca 32862762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 10174708 - 10174736
Alignment:
Q  72 taataatttaagaaaatggaagtgattaa 100  Q
    |||||||||||||||||||||||||||||    
T  10174708 taataatttaagaaaatggaagtgattaa 10174736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 34406440 - 34406480
Alignment:
Q  74 ataatttaagaaaatggaagtgattaaatgtaaccacatgt 114  Q
    |||||||||||||||| |||||||| |||||||||| ||||    
T  34406440 ataatttaagaaaatgaaagtgattgaatgtaaccatatgt 34406480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 27131744 - 27131680
Alignment:
Q  52 cactgtcacgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgt 116  Q
    ||||| |||||| |||  ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  27131744 cactggcacgtagacattggtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgt 27131680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 25260527 - 25260585
Alignment:
Q  58 cacgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgt 116  Q
    ||||||||||  | ||||||||||||||||||||||| |||||||||||||| ||||||    
T  25260527 cacgtaaacatggataataatttaagaaaatggaagtaattaaatgtaaccaaatgtgt 25260585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 22402386 - 22402436
Alignment:
Q  67 accggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgtc 117  Q
    ||||||||||| || ||||||| ||||||||| ||||||||||||||||||    
T  22402386 accggtaataaattgagaaaatagaagtgattgaatgtaaccacatgtgtc 22402436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 1678677 - 1678726
Alignment:
Q  67 accggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgt 116  Q
    |||| ||||||||| |||||||| ||||||||||||||||| ||||||||    
T  1678677 accgctaataatttgagaaaatgaaagtgattaaatgtaactacatgtgt 1678726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 31215034 - 31215086
Alignment:
Q  62 taaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatgt 114  Q
    |||||||||||||||| |||| ||||| ||||| ||| |||||||||||||||    
T  31215034 taaacaccggtaataagttaacaaaatagaagttattgaatgtaaccacatgt 31215086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 32754601 - 32754659
Alignment:
Q  53 actgtcacgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccaca 111  Q
    |||| |||||| ||||  |||||| |||||||||||| |||||||| ||||||||||||    
T  32754601 actgacacgtagacacttgtaatagtttaagaaaatgaaagtgattgaatgtaaccaca 32754659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 41052607 - 41052645
Alignment:
Q  76 aatttaagaaaatggaagtgattaaatgtaaccacatgt 114  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  41052607 aatttaagaaaatgaaagtaattaaatgtaaccacatgt 41052645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 51238050 - 51238012
Alignment:
Q  73 aataatttaagaaaatggaagtgattaaatgtaaccaca 111  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  51238050 aataatttaagaaaatggaagtgattgaatgtaagcaca 51238012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 2802143 - 2802094
Alignment:
Q  67 accggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgt 116  Q
    |||| |||||||||  || |||| ||||||||||||||||||||||||||    
T  2802143 accgctaataatttgggagaatgaaagtgattaaatgtaaccacatgtgt 2802094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 21606645 - 21606601
Alignment:
Q  72 taataatttaagaaaatggaagtgattaaatgtaaccacatgtgt 116  Q
    |||||||||||||||||  |||||||||| |||||| ||||||||    
T  21606645 taataatttaagaaaataaaagtgattaagtgtaactacatgtgt 21606601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 31201830 - 31201886
Alignment:
Q  62 taaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgtca 118  Q
    |||||||||||||||| | || ||||| |||||  || |||||||||||||||||||    
T  31201830 taaacaccggtaataagtcaacaaaatagaagttgttgaatgtaaccacatgtgtca 31201886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 16330988 - 16331035
Alignment:
Q  71 gtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgtca 118  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||    
T  16330988 gtaataatttaagaaaatgaaaatgattaaatgtaaccacatgtgtca 16331035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 28478113 - 28478048
Alignment:
Q  58 cacgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgtcaatgtc 123  Q
    |||||| ||||| |||||||||||| ||||| ||||||||| ||||||||   |||||||||||||    
T  28478113 cacgtagacacccgtaataatttaaaaaaatagaagtgattgaatgtaactgtatgtgtcaatgtc 28478048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 3943757 - 3943800
Alignment:
Q  71 gtaataatttaagaaaatggaagtgattaaatgtaaccacatgt 114  Q
    ||||||||||||||||||  |||||||| |||||||||||||||    
T  3943757 gtaataatttaagaaaataaaagtgattgaatgtaaccacatgt 3943800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 28616588 - 28616639
Alignment:
Q  62 taaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatg 113  Q
    |||||||| |||| |||||||||||||||||| |||  ||||||||||||||    
T  28616588 taaacaccagtaacaatttaagaaaatggaagcgatcgaatgtaaccacatg 28616639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 9581881 - 9581923
Alignment:
Q  71 gtaataatttaagaaaatggaagtgattaaatgtaaccacatg 113  Q
    |||||| |||||||||||| ||||||||||||||| |||||||    
T  9581881 gtaatagtttaagaaaatgaaagtgattaaatgtagccacatg 9581923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 10319349 - 10319307
Alignment:
Q  52 cactgtcacgtaaacaccggtaataatttaagaaaatggaagt 94  Q
    |||||||||||| ||| |||||||||| |||||||||||||||    
T  10319349 cactgtcacgtagacatcggtaataatataagaaaatggaagt 10319307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 29651675 - 29651630
Alignment:
Q  71 gtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgt 116  Q
    |||||| ||||||||||| |||||||||||| ||||| ||||||||    
T  29651675 gtaatattttaagaaaatagaagtgattaaacgtaacaacatgtgt 29651630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 30671481 - 30671514
Alignment:
Q  69 cggtaataatttaagaaaatggaagtgattaaat 102  Q
    |||||||| |||||||||||||||||||||||||    
T  30671481 cggtaatagtttaagaaaatggaagtgattaaat 30671514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 16567303 - 16567348
Alignment:
Q  73 aataatttaagaaaatggaagtgattaaatgtaaccacatgtgtca 118  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||    
T  16567303 aataatttaagaaaatggaaatgattgaatgtaaccacatgtgtca 16567348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 33318847 - 33318894
Alignment:
Q  71 gtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgtca 118  Q
    ||||||| |||||||||||  |||||||||||||||||||||||||||    
T  33318847 gtaataacttaagaaaatgagagtgattaaatgtaaccacatgtgtca 33318894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 2445500 - 2445448
Alignment:
Q  71 gtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgtcaatgtc 123  Q
    ||||| |||||||||||||||||||||| ||||||| ||||| || |||||||    
T  2445500 gtaatcatttaagaaaatggaagtgattgaatgtaatcacatttgccaatgtc 2445448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 10042292 - 10042342
Alignment:
Q  65 acaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtg 115  Q
    ||||| ||||||||||  |||||| ||||||||| ||||||||||||||||    
T  10042292 acaccagtaataatttgtgaaaatagaagtgattgaatgtaaccacatgtg 10042342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 24127657 - 24127603
Alignment:
Q  53 actgtcacgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaac 107  Q
    |||| |||| ||||||||||| |||||| |||||| |||||||||| ||||||||    
T  24127657 actgacacgcaaacaccggtattaatttgagaaaaaggaagtgattgaatgtaac 24127603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 40494306 - 40494258
Alignment:
Q  65 acaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatg 113  Q
    ||||||||||||||||||| ||||| |||||||| ||| ||| ||||||    
T  40494306 acaccggtaataatttaagcaaatgaaagtgattgaatttaatcacatg 40494258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 1116399 - 1116455
Alignment:
Q  70 ggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgtcaatgtcaga 126  Q
    ||||||||||| ||||||| |||||||||||||  || |||||||||||||||||||    
T  1116399 ggtaataatttgagaaaattgaagtgattaaataaaatcacatgtgtcaatgtcaga 1116455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 31652436 - 31652490
Alignment:
Q  52 cactgtcacgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaa 106  Q
    ||||||||| ||  ||||| ||||||||||||||||| ||||||||| |||||||    
T  31652436 cactgtcacatagtcaccgataataatttaagaaaatagaagtgattgaatgtaa 31652490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 18405035 - 18405080
Alignment:
Q  79 ttaagaaaatggaagtgatt-aaatgtaaccacatgtgtcaatgtc 123  Q
    |||||||||||||||||||| ||| |||||||||||||||| ||||    
T  18405035 ttaagaaaatggaagtgattgaaaggtaaccacatgtgtcagtgtc 18405080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 42065168 - 42065123
Alignment:
Q  71 gtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgt 116  Q
    ||||||| |||||||||| ||||||||| ||||||||||| |||||    
T  42065168 gtaataaattaagaaaatagaagtgattgaatgtaaccacgtgtgt 42065123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 45028388 - 45028351
Alignment:
Q  64 aacaccggtaataatttaagaaaatggaagtgattaaa 101  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  45028388 aacactggtaataatttaaaaaaatggaagtgattaaa 45028351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 20167629 - 20167673
Alignment:
Q  72 taataatttaagaaaatggaagtgattaaatgtaaccacatgtgt 116  Q
    |||||||||||| |||| ||||||||| |||||||||||| ||||    
T  20167629 taataatttaaggaaatagaagtgatttaatgtaaccacacgtgt 20167673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 35335608 - 35335652
Alignment:
Q  71 gtaataatttaagaaaatggaagtgattaaatgtaaccacatgtg 115  Q
    |||||||||| |||||||| ||||||||||||| |||||| ||||    
T  35335608 gtaataatttgagaaaatgaaagtgattaaatgcaaccacttgtg 35335652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 5453704 - 5453764
Alignment:
Q  58 cacgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgtca 118  Q
    |||||| |||| |||| |||||||||||||||||||||||| ||| |||||||||| ||||    
T  5453704 cacgtagacactggtagtaatttaagaaaatggaagtgattgaatataaccacatgagtca 5453764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 11496009 - 11496055
Alignment:
Q  61 gtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaac 107  Q
    |||||||||||||||||||||||||||| |||||||  |||||||||    
T  11496009 gtaaacaccggtaataatttaagaaaatagaagtgagcaaatgtaac 11496055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 8733605 - 8733552
Alignment:
Q  74 ataatttaagaaaatggaagtgattaaatg-taaccacatgtgtcaatgtcaga 126  Q
    ||||||||||||||||||||||||| | || ||||||||||||||| |||||||    
T  8733605 ataatttaagaaaatggaagtgatttattgttaaccacatgtgtcagtgtcaga 8733552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 31095138 - 31095202
Alignment:
Q  59 acgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgtcaatgtc 123  Q
    |||| ||||| ||||||||||| ||||||||||||| ||| ||| |||| |||||||| ||||||    
T  31095138 acgtcaacactggtaataatttgagaaaatggaagtaattgaatataactacatgtgttaatgtc 31095202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 39941300 - 39941348
Alignment:
Q  75 taatttaagaaaatggaagtgattaaatgtaaccacatgtgtcaatgtc 123  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||| ||||    
T  39941300 taatttaagaaaatgtaagcgattgaatgtaaccacatgtgtcactgtc 39941348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 22556234 - 22556280
Alignment:
Q  60 cgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaa 106  Q
    |||| |||| ||||||||||||||||||| ||||||||| |||||||    
T  22556234 cgtagacacaggtaataatttaagaaaatagaagtgattgaatgtaa 22556280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 43886595 - 43886652
Alignment:
Q  65 acaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatgtgtcaatgtc 123  Q
    ||||| |||||||||||||| |||| || |||||||| |||| ||||||||||||||||    
T  43886595 acaccagtaataatttaagataatg-aattgattaaacgtaatcacatgtgtcaatgtc 43886652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 15804156 - 15804120
Alignment:
Q  70 ggtaataatttaagaaaatggaagtgattaaatgtaa 106  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  15804156 ggtaataatttgagaaaatggaagtgattgaatgtaa 15804120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 32199512 - 32199540
Alignment:
Q  60 cgtaaacaccggtaataatttaagaaaat 88  Q
    |||||||||||||||||||||||||||||    
T  32199512 cgtaaacaccggtaataatttaagaaaat 32199540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 32915899 - 32915855
Alignment:
Q  69 cggtaataatttaagaaaatggaagtgattaaatgtaaccacatg 113  Q
    ||||||| |||| | ||||||||||||||| ||||||||||||||    
T  32915899 cggtaatgatttgaaaaaatggaagtgattgaatgtaaccacatg 32915855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 438730 - 438688
Alignment:
Q  72 taataatttaagaaaatggaagtgattaaatgtaaccacatgt 114  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  438730 taataatttaagaaaattgaagtaattaaatgtaaccacatgt 438688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 43434507 - 43434548
Alignment:
Q  57 tcacgtaaacaccggtaataatttaagaaaatggaagtgatt 98  Q
    ||||||| |||||| |||||||||||||||||| ||||||||    
T  43434507 tcacgtagacaccgataataatttaagaaaatgaaagtgatt 43434548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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