View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7523_low_8 (Length: 484)
Name: NF7523_low_8
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7523_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 37821861 - 37821392
Alignment:
| Q |
1 |
ctggaggtagcgaaaacaaggagcattatagatgaaggttttacacagagaaattaaaatgagtatatattgatcctaaatataaataattctgtttatt |
100 |
Q |
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| T |
37821861 |
ctggaggtagcgaaaacaaggagcattatagatgaaggttttacacagagaaattaaaatgagtatatattgatcctaaatataaataattctgtttatt |
37821762 |
T |
|
| Q |
101 |
atcaaactcttggtaacttgtgttaggacatattacaaatttagcagtnnnnnnnngtaaggaaatatactcaccattattattcaaaaatatcaatgtg |
200 |
Q |
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| T |
37821761 |
atcaaactcttggtaacttgtgttaggacatattacaaatttagcagtaaaaaaaagtaaggaaatatactcaccattattattcaaaaatatcaatgtg |
37821662 |
T |
|
| Q |
201 |
aaagtatacatgcatataattttaatcatatgaaacagttctttcaaatgtttaattgttgaatttttcctaaagtattgttgctatttaatgatacacc |
300 |
Q |
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| T |
37821661 |
aaaatatacatgcatataattttaatcatatgaaacagtttcttcaaatgtttaattgttgaatttttcctaaagtattgttgccatttaatgatacacc |
37821562 |
T |
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| Q |
301 |
agaagcaacaattggtatcttcttgtcatgctccttttggatgcaagtcaaagatgagttggcaatgggaattgaatcacattgaatagagtcttttgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821561 |
agaagcaacaattggtatcttcttgtcatgctccttttggatgcaagtcaaagatgagttggcaatgggaattgaatcacattgaatagagtcttttgca |
37821462 |
T |
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| Q |
401 |
gacaccatttcattcatattatcgacctctcttgcttctttgcttttaccccacaataacatgtacaatc |
470 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821461 |
gacactatttcattcatattatccacctctcttgcttctttgcttttaccccacaataacatgtacaatc |
37821392 |
T |
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