View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7523_low_9 (Length: 472)

Name: NF7523_low_9
Description: NF7523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7523_low_9
NF7523_low_9
[»] chr4 (4 HSPs)
chr4 (6-420)||(28336266-28336675)
chr4 (65-141)||(47503632-47503708)
chr4 (417-454)||(44788184-44788221)
chr4 (346-391)||(15707457-15707502)
[»] chr5 (2 HSPs)
chr5 (62-258)||(22635843-22636039)
chr5 (331-386)||(17850586-17850641)
[»] chr2 (5 HSPs)
chr2 (62-138)||(9070891-9070967)
chr2 (71-138)||(18140983-18141050)
chr2 (67-117)||(42083394-42083444)
chr2 (62-144)||(30799717-30799799)
chr2 (346-391)||(3378333-3378378)
[»] chr3 (6 HSPs)
chr3 (67-122)||(11483888-11483943)
chr3 (68-145)||(22310092-22310168)
chr3 (63-142)||(27175097-27175176)
chr3 (67-138)||(43733107-43733177)
chr3 (68-117)||(45207373-45207422)
chr3 (72-144)||(8398285-8398357)
[»] chr1 (1 HSPs)
chr1 (69-141)||(49130006-49130078)
[»] chr8 (4 HSPs)
chr8 (72-138)||(5336241-5336307)
chr8 (68-144)||(23890359-23890435)
chr8 (62-144)||(23890587-23890669)
chr8 (346-391)||(44495603-44495648)
[»] scaffold0477 (1 HSPs)
scaffold0477 (68-116)||(1136-1184)
[»] chr6 (2 HSPs)
chr6 (68-116)||(4650119-4650167)
chr6 (67-124)||(446008-446065)
[»] scaffold1526 (1 HSPs)
scaffold1526 (346-391)||(1155-1200)
[»] scaffold0642 (1 HSPs)
scaffold0642 (346-391)||(4201-4246)
[»] scaffold0345 (1 HSPs)
scaffold0345 (346-391)||(14113-14158)
[»] scaffold0105 (1 HSPs)
scaffold0105 (346-391)||(24823-24868)


Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 6 - 420
Target Start/End: Complemental strand, 28336675 - 28336266
Alignment:
Q  6 gtcgaagaatatgctaaccaaccaagtcaaacacgcgcttgaagatttcgccattgtatcatatcatacttactctaaaagctaattaggtcaagcaatt 105  Q
    |||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||    
T  28336675 gtcgaataagatgctaaccaaccaagtcaaacatgcgcttgaagatttcgccattgtatcata-----cttactctaaaagctaattaggtcaagcaatt 28336581  T
Q  106 gcttaaccctaattgcttttgtgatttccctcctaagcatcagttataggtgtgttcaacaagctattgctacctcatttaatgttgtttcaaatttaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28336580 gcttaaccctaattgcttttgtgatttccctcctaagcatcagttataggtgtgttcaacaagctattgctacctcatttaatgttgtttcaaatttaaa 28336481  T
Q  206 cttccttcccaactgtacatgtcataaattaagtatctattggtttgccaacttattaataatttactcatattgcatactttctttctctgcacgattc 305  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28336480 cttccttcccaactgtacatgtcataaattaagtgtctattggtttgccaacttattaataatttactcatattgcatactttctttctctacacgattc 28336381  T
Q  306 caattccggtcatttttctcttccatggattcattcttatctccagattggttagtggtttcgttcatccctcctaacccccaactccgccgtcgtatca 405  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28336380 caattccggtaatttttctcttccatggattcattcttatctccagattggttagtggtttcgttcatccctcctaacccccaactccgccgtcgtagca 28336281  T
Q  406 atctcaaccctttca 420  Q
    |||||||||||||||    
T  28336280 atctcaaccctttca 28336266  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 47503632 - 47503708
Alignment:
Q  65 catatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcctaa 141  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |  | |||||||||||||    
T  47503632 catatcatacttactctaaaagctaattaagtcaagcaattgcttaaccctaattgctatgataatttccctcctaa 47503708  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 454
Target Start/End: Complemental strand, 44788221 - 44788184
Alignment:
Q  417 ttcaaccttcttagtacagcactttgtaaggcgttttc 454  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  44788221 ttcaaccttctcagtacagcactttgtaaggcgttttc 44788184  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 15707457 - 15707502
Alignment:
Q  346 ctccagattggttagtggtttcgttcatccctcctaacccccaact 391  Q
    |||||||| ||| ||||| ||||||| |||||||||||||||||||    
T  15707457 ctccagatcggtgagtggcttcgttcttccctcctaacccccaact 15707502  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 62 - 258
Target Start/End: Complemental strand, 22636039 - 22635843
Alignment:
Q  62 tatcatatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcctaagcatcagttataggtgtgtt 161  Q
    |||||||||||||||||| ||||||||||||||| |||||   |||| |||||||||  |||  ||| |||||||||||||||||| |   |||||||||    
T  22636039 tatcatatcatacttactttaaaagctaattagggcaagcttatgctaaaccctaataacttaagtgttttccctcctaagcatcaatccaaggtgtgtt 22635940  T
Q  162 caacaagctattgctacctcatttaatgttgtttcaaatttaaacttccttcccaactgtacatgtcataaattaagtatctattggtttgccaact 258  Q
    | |||||| | ||| | ||||||||||| | |||||||||||||||||| || ||| || ||||||||||  |||||| ||| ||||||||||||||    
T  22635939 ctacaagccaatgccatctcatttaatgctctttcaaatttaaacttccctctcaaatgcacatgtcatagcttaagtgtcttttggtttgccaact 22635843  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 17850641 - 17850586
Alignment:
Q  331 tggattcattcttatctccagattggttagtggtttcgttcatccctcctaacccc 386  Q
    ||||||||||| ||||| || |||||||||||| || ||||||||||| |||||||    
T  17850641 tggattcattcctatcttcatattggttagtggctttgttcatccctcataacccc 17850586  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 9070891 - 9070967
Alignment:
Q  62 tatcatatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcc 138  Q
    |||||||||||||||| | ||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  9070891 tatcatatcatacttattataaaagccaattaggtcaagcaaatgcttaaccctaattgcttttgtgttttccctcc 9070967  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 18141050 - 18140983
Alignment:
Q  71 atacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcc 138  Q
    ||||||| | ||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  18141050 atacttattataaaagccaattaggtcaagcaaatgcttaaccctaattgcttttgtgctttccctcc 18140983  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 42083394 - 42083444
Alignment:
Q  67 tatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaa 117  Q
    ||||||||||||| ||||||||||||||||||||| ||  |||||||||||    
T  42083394 tatcatacttactttaaaagctaattaggtcaagctataacttaaccctaa 42083444  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 30799717 - 30799799
Alignment:
Q  62 tatcatatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcctaagca 144  Q
    |||||||||||||||||| |||||||| |||  || ||||  ||||| || |||||| |||||||   |||||||||||||||    
T  30799717 tatcatatcatacttactataaaagcttatttcgttaagcttttgctaaagcctaatagcttttggcttttccctcctaagca 30799799  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 3378333 - 3378378
Alignment:
Q  346 ctccagattggttagtggtttcgttcatccctcctaacccccaact 391  Q
    |||||||| ||| ||||| ||||||| |||||||||||||||||||    
T  3378333 ctccagatcggtgagtggcttcgttcttccctcctaacccccaact 3378378  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 11483943 - 11483888
Alignment:
Q  67 tatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgct 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11483943 tatcatacttactctaaaagctaattaggtcaagcaattgcttagccctaattgct 11483888  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 22310168 - 22310092
Alignment:
Q  68 atcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcctaagcat 145  Q
    |||||||||| |||||||||| ||||||||||| || |||||||||||||| ||||| || |||||||||| ||||||    
T  22310168 atcatacttattctaaaagcttattaggtcaagtaaatgcttaaccctaatagctttggt-atttccctcccaagcat 22310092  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 27175176 - 27175097
Alignment:
Q  63 atcatatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcctaag 142  Q
    ||||||||||||||||| | |||||| ||||||||||||  ||||| ||||||||| |||||||   |||||||||||||    
T  27175176 atcatatcatacttactatgaaagcttattaggtcaagcttttgctaaaccctaatagcttttggtttttccctcctaag 27175097  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 43733177 - 43733107
Alignment:
Q  67 tatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcc 138  Q
    ||||||||||| | ||||||  |||||| |||||||| |||||||||||| ||||||||||| |||||||||    
T  43733177 tatcatacttattataaaagtcaattag-tcaagcaaatgcttaaccctacttgcttttgtgttttccctcc 43733107  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 45207373 - 45207422
Alignment:
Q  68 atcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaa 117  Q
    |||||||||||| ||||||||||||||||||||| ||  |||||||||||    
T  45207373 atcatacttactttaaaagctaattaggtcaagctataacttaaccctaa 45207422  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 8398357 - 8398285
Alignment:
Q  72 tacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcctaagca 144  Q
    |||||||| |||||||| ||||||||||||  ||||| ||||||||| ||| |||   |||||||||||||||    
T  8398357 tacttactataaaagcttattaggtcaagcttttgctaaaccctaatagctcttggcttttccctcctaagca 8398285  T

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Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 49130078 - 49130006
Alignment:
Q  69 tcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcctaa 141  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || |  | |||||||||||||    
T  49130078 tcatacttactctaaaagctaattaggtcaagcaattgcttagccctaattactatgctaatttccctcctaa 49130006  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 5336241 - 5336307
Alignment:
Q  72 tacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcc 138  Q
    |||||| | ||||||  ||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  5336241 tacttattataaaagtcaattaggtcaagcaaatgcttaaccctaattgcttttgtattttccctcc 5336307  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 23890359 - 23890435
Alignment:
Q  68 atcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcctaagca 144  Q
    |||||||||||| |||||||| || |||||||||  ||||| |||||||||||||||||   ||||||||| |||||    
T  23890359 atcatacttactataaaagcttataaggtcaagcttttgctaaaccctaattgcttttggcttttccctccaaagca 23890435  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 23890587 - 23890669
Alignment:
Q  62 tatcatatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcctaagca 144  Q
    |||||||||||||||| | |||||||| || |||||||||  ||| | |||| ||||||||||||   ||||||||| |||||    
T  23890587 tatcatatcatacttattataaaagcttataaggtcaagcttttggtaaaccataattgcttttggcttttccctccaaagca 23890669  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 44495603 - 44495648
Alignment:
Q  346 ctccagattggttagtggtttcgttcatccctcctaacccccaact 391  Q
    |||||||| ||| ||||| ||||||| |||||||||||||||||||    
T  44495603 ctccagatcggtgagtggcttcgttcttccctcctaacccccaact 44495648  T

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Target: scaffold0477 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 1184 - 1136
Alignment:
Q  68 atcatacttactctaaaagctaattaggtcaagcaattgcttaacccta 116  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| |||||    
T  1184 atcatacttactctaaaagctaattaggtaaagcaattgtttagcccta 1136  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 4650167 - 4650119
Alignment:
Q  68 atcatacttactctaaaagctaattaggtcaagcaattgcttaacccta 116  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| |||||    
T  4650167 atcatacttactctaaaagctaattaggtaaagcaattgtttagcccta 4650119  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 446065 - 446008
Alignment:
Q  67 tatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttt 124  Q
    ||||||||||||| |||||||| |||| ||||||||  |||||||||||||| |||||    
T  446065 tatcatacttactttaaaagcttattatgtcaagcagatgcttaaccctaatagcttt 446008  T

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Target: scaffold1526 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Complemental strand, 1200 - 1155
Alignment:
Q  346 ctccagattggttagtggtttcgttcatccctcctaacccccaact 391  Q
    |||||||| ||| ||||| ||||||| |||||||||||||||||||    
T  1200 ctccagatcggtgagtggcttcgttcttccctcctaacccccaact 1155  T

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Target: scaffold0642 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 4201 - 4246
Alignment:
Q  346 ctccagattggttagtggtttcgttcatccctcctaacccccaact 391  Q
    |||||||| ||| ||||| ||||||| |||||||||||||||||||    
T  4201 ctccagatcggtgagtggcttcgttcttccctcctaacccccaact 4246  T

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Target: scaffold0345 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 14113 - 14158
Alignment:
Q  346 ctccagattggttagtggtttcgttcatccctcctaacccccaact 391  Q
    |||||||| ||| ||||| ||||||| |||||||||||||||||||    
T  14113 ctccagatcggtgagtggcttcgttcttccctcctaacccccaact 14158  T

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Target: scaffold0105 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Complemental strand, 24868 - 24823
Alignment:
Q  346 ctccagattggttagtggtttcgttcatccctcctaacccccaact 391  Q
    |||||||| ||| ||||| ||||||| |||||||||||||||||||    
T  24868 ctccagatcggtgagtggcttcgttcttccctcctaacccccaact 24823  T

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