View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7524_high_2 (Length: 632)
Name: NF7524_high_2
Description: NF7524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7524_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 332
Target Start/End: Original strand, 45129694 - 45130011
Alignment:
| Q |
15 |
tcagtttctaaggtaaatttggcagtactcgtatatatactgtgtatatgaagggtttgagtctattgttttatagttctatcttatgaatcatgttgtg |
114 |
Q |
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| T |
45129694 |
tcagtttctaaggtaaatttggcagtactcgtatatatactgtgtatatgaagggtttgagtctattgttttatagttctatcttatgaatcatgttgtg |
45129793 |
T |
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| Q |
115 |
ttgagtgcatggctcatagtcatatctgtgaaatccggatagacgttcatagttaaaacgctggttgtgtttatgctgcaaacatttatacatggtaaaa |
214 |
Q |
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| T |
45129794 |
ttgagtgcatggctcatagtcatatctgtgaaatccggatagacgttcatagttaaaacgctggttgtgtttatgctgcaaacatttatacatggtaaaa |
45129893 |
T |
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| Q |
215 |
taagggaaaattatggttgcggattgcaatttaaaactactggagcaggcggagtagtgaaaagtaaaacctagccgctctgctcctaggaatgtagtca |
314 |
Q |
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| T |
45129894 |
taagggaaaattatggttgcggattgcaatttaaaactactggagcaggcggagtagtgaaaagtaaaacctagccgctctgctcctaggaatgtagtca |
45129993 |
T |
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| Q |
315 |
cattgttcataaatctag |
332 |
Q |
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| T |
45129994 |
cattgttcataaatctag |
45130011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 387 - 622
Target Start/End: Original strand, 45130066 - 45130301
Alignment:
| Q |
387 |
gcaacaaatcagttttcaattgaaagataatttatcatcattatatttctaaaacaggcatgagcagattgtaatggtgagtggtggaagtggcataact |
486 |
Q |
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| T |
45130066 |
gcaacaaatcagttttcaattgaaagataatttatcatcattatatctctaaaacaggcatgagcagattgcaatggtgagtggtggaagtggcataact |
45130165 |
T |
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| Q |
487 |
ccatttatatctataatccgtgatctcatatttcaaagccaacaacaagaatttcaacctccaaaactcctacttgtttgtattttcaaaaactatgttg |
586 |
Q |
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| T |
45130166 |
ccatttatatctataatccgtgatctcatatttcaaagccaacaacaagaatttcaacctccaaaactcctacttgtttgtattttcaaaaactatgttg |
45130265 |
T |
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| Q |
587 |
atctagccatgttagatcttatgcttcctgtctctg |
622 |
Q |
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| T |
45130266 |
atctagccatgttagatcttatgcttcctgtttctg |
45130301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 388 - 615
Target Start/End: Original strand, 45113163 - 45113390
Alignment:
| Q |
388 |
caacaaatcagttttcaattgaaagataatttatcatcattatatttctaaaacaggcatgagcagattgtaatggtgagtggtggaagtggcataactc |
487 |
Q |
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| T |
45113163 |
caacaaaacaattttcaattgaaagctaatttatcatcattctatctctaaaacaggcatgagcagattgtgatggtgagtggcggaagtggcgtaactc |
45113262 |
T |
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| Q |
488 |
catttatatctataatccgtgatctcatatttcaaagccaacaacaagaatttcaacctccaaaactcctacttgtttgtattttcaaaaactatgttga |
587 |
Q |
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| T |
45113263 |
ccttcatatctataatccgagatctcatatttcaaagccaacaacaagaattccaacctccaaaactcctacttgtttgtattttcaaaaactacgctga |
45113362 |
T |
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| Q |
588 |
tctagccatgttagatcttatgcttcct |
615 |
Q |
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| T |
45113363 |
tctaaccatgttagatcttatgcttcct |
45113390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 438 - 587
Target Start/End: Original strand, 45112773 - 45112922
Alignment:
| Q |
438 |
aaacaggcatgagcagattgtaatggtgagtggtggaagtggcataactccatttatatctataatccgtgatctcatatttcaaagccaacaacaagaa |
537 |
Q |
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| T |
45112773 |
aaacaggcatgaacagattgtgatggtgagtcgtggaagtcgcataactcccttcatatctataatccgtgatctcatatttcaaagctaacaacaagaa |
45112872 |
T |
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| Q |
538 |
tttcaacctccaaaactcctacttgtttgtattttcaaaaactatgttga |
587 |
Q |
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| T |
45112873 |
tttcaacctccaaaactcctacttgtttgtattttcaaaaactatgttga |
45112922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 156 - 316
Target Start/End: Original strand, 45112921 - 45113082
Alignment:
| Q |
156 |
gacgttcatagttaaaacgctggttgtgtttatgctgcaaacatttataca-tggtaaaataagggaaaattatggttgcggattgcaatttaaaactac |
254 |
Q |
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| T |
45112921 |
gacgttcatagttaaaccgctggttctgtttatgctgcaaacgtttatactgtggtaaaataaggataaattatggttgcggactgcaatttaaaactat |
45113020 |
T |
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| Q |
255 |
tggagcaggcggagtagtgaaaagtaaaacctagccgctctgctcctaggaatgtagtcaca |
316 |
Q |
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| T |
45113021 |
tggagcaggcggagtagtgaaaagtaaaacctagccgctctgctcctaggaatgtaatcaca |
45113082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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