View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7524_low_1 (Length: 799)
Name: NF7524_low_1
Description: NF7524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7524_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 700; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 19 - 778
Target Start/End: Original strand, 29298473 - 29299230
Alignment:
| Q |
19 |
agcacagcagttacaatctcaaatgccattaccaatctctatggtaattctctcatgtcttcatagcatagtatgataaatnnnnnnngaaagggttatt |
118 |
Q |
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| T |
29298473 |
agcacagcagttacaatctcaaatgccattaccaatctctatggtaattctctcatgtcttcatagcatagtatgataaataaaaaaagaaagggttatt |
29298572 |
T |
|
| Q |
119 |
tgtaattgaacatgtttgtgtttggaaattctgtagcgacagtattcggacaaagcttaaagttggagccgctgaagcctgagaagaaaatcatgtggaa |
218 |
Q |
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| T |
29298573 |
tgtaaatgaacatgtttgtgtttggaaattctgtagcgacggtattcggacaaagcttaaagttggagccgctgaagcctgagaagaaaatcatgtggaa |
29298672 |
T |
|
| Q |
219 |
aagagaaatgaaagttcttctatctgtgtgtgattacatacaagaatttgccccaactgcacaatatttagaagatggcacaattgtggaggtgattttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29298673 |
aagagaaatgaaagttcttctatctgtgtgtgattacatacaagaatttgccccaactgcacaatatttagaagatggcacaattgtggaggtgattttt |
29298772 |
T |
|
| Q |
319 |
gtttgccaaatgatattctttttatagacaaatattagtataatagttgttattatgttcatattgtctccttcacagtggagccaaatgatagctataa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29298773 |
gtttgccaaatgatattctttttatagacaaatattagtataatagttgttattatgttcgtattgtctccttcacagtggagccaaatgatagctataa |
29298872 |
T |
|
| Q |
419 |
cttcgatgaaacctgtttgtgatctctaatatggggttctctttcagatgatgaaaagcaggccaaggtcagatatttatatcaatctcccagcactgca |
518 |
Q |
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| T |
29298873 |
cttcgatgaaacctgtttgtgatctctaatatggtgttctctttcagatgatgaaaagcaggccaaggtcagatatttatatcaatctcccagcactgca |
29298972 |
T |
|
| Q |
519 |
gaagcttgacacaatgcttatagtaagaaagacatcatttgcttctttcatgtgagaactaagtttttcatcaagttcttgtgactgataaacatgacaa |
618 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29298973 |
gaagcttgacacaatgcttatagtaagaa--acctcatttgcttctttcatgcgagaactaagtttttcatcaagttcttgtgactgataaacatgacaa |
29299070 |
T |
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| Q |
619 |
tgttgtttacaggaaatattagattcttttgaggatactgaattctggtatgcagagaacgtatcagcaagttcgcctcgtttacgtgcagcctcgtttc |
718 |
Q |
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| T |
29299071 |
tgttgtttacaggaaatattagattcttttgaggatactgaattctggtatgcagagaacgtatcagcaagttcgcctcgtttacgtgcagcctcgtttc |
29299170 |
T |
|
| Q |
719 |
gaaggattgctccaaggaaagacgagaaatggtggttgccagttccttgtgttctccctg |
778 |
Q |
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| T |
29299171 |
gaaggattgctcaaaggaaagacgagaaatggtggttgccagttccttgtgttctccctg |
29299230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 6e-30; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 160 - 311
Target Start/End: Complemental strand, 11476483 - 11476332
Alignment:
| Q |
160 |
gtattcggacaaagcttaaagttggagccgctgaagcctgagaagaaaatcatgtggaaaagagaaatgaaagttcttctatctgtgtgtgattacatac |
259 |
Q |
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||||| ||||||| || ||||||||||| || ||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||||||| |
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| T |
11476483 |
gtatttggacaaaatttgaagttggagcctctaaagcctgagaagaaagctatgtggaaaagagaaatgaattgtcttatgtctgtgtgtgattacatag |
11476384 |
T |
|
| Q |
260 |
aagaatttgccccaactgcacaatatttagaagatggcacaattgtggaggt |
311 |
Q |
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| T |
11476383 |
tagaatttgcaccaactgcacaatacttggatgatggtacaattgtggaggt |
11476332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 458 - 546
Target Start/End: Complemental strand, 11476182 - 11476094
Alignment:
| Q |
458 |
tctttcagatgatgaaaagcaggccaaggtcagatatttatatcaatctcccagcactgcagaagcttgacacaatgcttatagtaaga |
546 |
Q |
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||||||||||||||| ||| || |||||| ||||||||||||| || || ||||| || |||||||||||||| ||||||||||||||| |
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| T |
11476182 |
tctttcagatgatgacaagtagaccaagggcagatatttatataaaccttccagctctacagaagcttgacacgatgcttatagtaaga |
11476094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 706 - 772
Target Start/End: Complemental strand, 11475903 - 11475837
Alignment:
| Q |
706 |
gcagcctcgtttcgaaggattgctccaaggaaagacgagaaatggtggttgccagttccttgtgttc |
772 |
Q |
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|||| ||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
11475903 |
gcaggctcgtttcgaattattgctcaaagaaaagatgagaaatggtggttgccagttccttgtgttc |
11475837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 11476839 - 11476792
Alignment:
| Q |
20 |
gcacagcagttacaatctcaaatgccattaccaatctctatggtaatt |
67 |
Q |
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|||| ||||||||||| |||||| | |||||||||||||||||||||| |
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| T |
11476839 |
gcactgcagttacaatatcaaattcaattaccaatctctatggtaatt |
11476792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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