View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7524_low_3 (Length: 626)
Name: NF7524_low_3
Description: NF7524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7524_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Original strand, 3658528 - 3659126
Alignment:
| Q |
1 |
accctaacctctaccttggttatcttgtatgtacacaagaacagtcactgctgccaaagaccctatgcttacgaaaaaatagaaccagctgaaaaattta |
100 |
Q |
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| T |
3658528 |
accccaacctctaccttggttatcttgtatgtacacaagaacagtcactgctgccaaagaccctatgcttacgaaaaaatagaaccagctgaaaaattta |
3658627 |
T |
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| Q |
101 |
atcatacccttcttttcttggtcatctgaatcatcaaattgatcggaaccaaagccagagacactagattttagaccgccagtgccgagggctgtgacat |
200 |
Q |
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| T |
3658628 |
atcatacccttcttttcttggtcatctgaatcatcaaattgatcggaaccaaagccagagacactagattttagaccgccagtgccgagggctgtgatat |
3658727 |
T |
|
| Q |
201 |
aaagtgctaaatacatcaccaatagttgcttgctgtctgcttgtatgcaagatttagagtcttctttgcattttggtggatgtaagcttggaattatagt |
300 |
Q |
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| T |
3658728 |
aaagtgctaaatacatcaccaatagttgcttgctgtctgcttgtatgcaagatttagagtcttctttgcattttggtggatgtaagcttggaattatagt |
3658827 |
T |
|
| Q |
301 |
tgatatcgtcaatattgttacaccctaatataaacacacattcgtcaagatcaaagaattaaacaagtgatgtattttgatttgaggatttaattcaaag |
400 |
Q |
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| T |
3658828 |
tgatatcgtcaatattgttacaccctaatataaacatacattcgtcaagatcaaagaattaaacaagtgatgtattttgatttgaggatttaattcaaag |
3658927 |
T |
|
| Q |
401 |
acattgttaacgtaagaaaaatttacattgtcaattaattataatcgtctaatcgtcgtatcattaaaaattaatgagttacttcaatcagaatatttat |
500 |
Q |
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| T |
3658928 |
acattgttaacataagaaaaatttacattgtcaattaatta--------taatcgtcgtatcattaaaaattaatgagttacttcaatcagaatatttat |
3659019 |
T |
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| Q |
501 |
ttgaatttttgcaaacctttttacatgtgtactaatattaaaatcttgatttgaatgtaaaatagtactagaaaacaatggaaacaacaaaatgaatagt |
600 |
Q |
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| T |
3659020 |
ttgaatttttgcaaacctttttacatgtgtactaatattaaaatcttgatttgaatgtaaaatagtactagaaaacaatggaaacaacaaaatgaatagt |
3659119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 3646226 - 3646305
Alignment:
| Q |
132 |
catcaaattgatcggaaccaaagccagagacactagattttagaccgccagtgccgagggctgtgacataaagtgctaaa |
211 |
Q |
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| T |
3646226 |
catcaaattgatctgaaccaaagccagggacactggattttaaaccccctgtgccaagtgcagtgacataaagcgctaaa |
3646305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 267 - 336
Target Start/End: Complemental strand, 41872691 - 41872622
Alignment:
| Q |
267 |
tgcattttggtggatgtaagcttggaattatagttgatatcgtcaatattgttacaccctaatataaaca |
336 |
Q |
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| T |
41872691 |
tgcattttggtggatgtaggcttggaattattgttgatattgtcaagattgtaacaccctagtatgaaca |
41872622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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