View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7524_low_4 (Length: 457)

Name: NF7524_low_4
Description: NF7524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7524_low_4
NF7524_low_4
[»] chr4 (9 HSPs)
chr4 (6-441)||(29563421-29563855)
chr4 (278-367)||(24193467-24193558)
chr4 (278-379)||(24443920-24444023)
chr4 (283-368)||(40709476-40709563)
chr4 (338-377)||(49219083-49219122)
chr4 (324-378)||(47970248-47970302)
chr4 (278-314)||(35533344-35533380)
chr4 (283-323)||(36460468-36460508)
chr4 (283-323)||(36461959-36461999)
[»] chr8 (11 HSPs)
chr8 (283-379)||(34563137-34563235)
chr8 (278-379)||(35869719-35869822)
chr8 (334-378)||(2699246-2699290)
chr8 (283-368)||(31884481-31884568)
chr8 (278-373)||(40280296-40280393)
chr8 (284-378)||(35453709-35453805)
chr8 (327-377)||(12361125-12361175)
chr8 (278-315)||(31296004-31296041)
chr8 (283-315)||(7008516-7008548)
chr8 (338-378)||(26820143-26820183)
chr8 (334-378)||(38561666-38561710)
[»] scaffold0024 (1 HSPs)
scaffold0024 (278-377)||(27458-27559)
[»] chr7 (9 HSPs)
chr7 (278-376)||(30133933-30134031)
chr7 (283-368)||(6552366-6552453)
chr7 (278-367)||(22388001-22388092)
chr7 (277-315)||(2221846-2221884)
chr7 (324-378)||(3610826-3610880)
chr7 (284-377)||(42656402-42656498)
chr7 (338-378)||(991196-991236)
chr7 (337-377)||(39591554-39591594)
chr7 (283-360)||(47559712-47559791)
[»] chr5 (11 HSPs)
chr5 (278-368)||(26516180-26516272)
chr5 (294-368)||(29588778-29588854)
chr5 (278-315)||(7550618-7550655)
chr5 (278-323)||(13782009-13782054)
chr5 (278-376)||(20982223-20982323)
chr5 (278-315)||(39257537-39257574)
chr5 (283-315)||(11911801-11911833)
chr5 (279-315)||(23999039-23999075)
chr5 (286-351)||(27104527-27104594)
chr5 (278-375)||(29115302-29115401)
chr5 (338-378)||(33234306-33234345)
[»] chr6 (12 HSPs)
chr6 (278-378)||(32975860-32975962)
chr6 (283-375)||(5884947-5885041)
chr6 (278-378)||(9027459-9027561)
chr6 (289-323)||(8349807-8349841)
chr6 (278-315)||(2785819-2785856)
chr6 (324-377)||(24836286-24836339)
chr6 (285-367)||(31461567-31461651)
chr6 (278-323)||(31828914-31828959)
chr6 (283-368)||(2023725-2023812)
chr6 (283-315)||(9041568-9041600)
chr6 (334-378)||(24774698-24774742)
chr6 (278-310)||(31958701-31958733)
[»] chr1 (8 HSPs)
chr1 (278-377)||(36641757-36641858)
chr1 (278-367)||(14128568-14128659)
chr1 (278-315)||(5923372-5923409)
chr1 (278-315)||(21516255-21516292)
chr1 (325-378)||(40943470-40943523)
chr1 (283-323)||(24775162-24775202)
chr1 (286-377)||(26184645-26184734)
chr1 (283-315)||(52013784-52013816)
[»] chr2 (9 HSPs)
chr2 (278-376)||(33197327-33197427)
chr2 (283-321)||(5043694-5043732)
chr2 (324-378)||(28803592-28803646)
chr2 (345-378)||(1742118-1742151)
chr2 (278-323)||(5942807-5942852)
chr2 (325-378)||(10143103-10143156)
chr2 (278-322)||(19333429-19333473)
chr2 (278-330)||(40158645-40158697)
chr2 (283-382)||(40943798-40943897)
[»] scaffold0100 (1 HSPs)
scaffold0100 (283-368)||(42504-42591)
[»] chr3 (5 HSPs)
chr3 (285-323)||(29094270-29094308)
chr3 (278-327)||(20143821-20143870)
chr3 (278-327)||(23269319-23269368)
chr3 (324-368)||(16790184-16790228)
chr3 (283-315)||(22723949-22723981)


Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Complemental strand, 29563855 - 29563421
Alignment:
Q  6 gtgagaagaagagggagagagttgttattgagagaggtgatggatcgttgttggaggaagagaagtggaagtttcaagcggaaatgctgagagctgagtg 105  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563855 gtgaggagaggagggagagagttgttattgagagaggtgatggatcgttgttggaggaagagaagtggaagtttcaagcggaaatgctgagagctgagtg 29563756  T
Q  106 taatttgttgaggatggagaaagagatagctgttaagaagttggaaaggactcgttccaagatggaacggactctaagatctgcagttcatacccttgtt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563755 taatttgttgaggatggagaaagagatagctgttaagaagttggaaaggactcgttccaagatggaacggactctaagatctgcagttcatacccttgtt 29563656  T
Q  206 tctgttagtttcactttctccttcaaactttcatttttattctatcattgtattgttttttcgatcaatttggtttcgataaacaacttaattaaacgct 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29563655 tctgttagtttcactttctccttcaaactttcatttttattctatcattgtattgttttttcgatcaatttggttt-gataaacaacttaattaaacgct 29563557  T
Q  306 tatagcataaccacttattataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaacattgtcatgtactagctgttttcggaa 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29563556 tatagcataaccacttattataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaacattgtcatgtactagctgttttcagaa 29563457  T
Q  406 gctattctagagaacttgtgggaataagttgaaaac 441  Q
    ||||||||||||||||||||||||||||||||||||    
T  29563456 gctattctagagaacttgtgggaataagttgaaaac 29563421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 367
Target Start/End: Original strand, 24193467 - 24193558
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaa 367  Q
    |||| |||||||||||||||| | | |||||||||||| | |||||  ||||||||| ||| |||||||||||| |||||||||||||||||    
T  24193467 gtttggataaacaacttaattgagcacttatagcataaacgcttatcatataagtacttatgtataagttatttttacaacaaaatataaaa 24193558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 379
Target Start/End: Original strand, 24443920 - 24444023
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 375  Q
    |||| |||| ||||||| ||||| |||||||||||||| |||||||  ||||||| | ||| ||||||  ||||||||||||||||||||||| || |||    
T  24443920 gtttggatacacaactttattaagcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattca 24444019  T
Q  376 aaca 379  Q
    ||||    
T  24444020 aaca 24444023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 40709563 - 40709476
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataaccactta--ttataagtacgtatatataagttatttctacaacaaaatataaaat 368  Q
    ||||||||||||||||||  ||||||| ||||||||||||   ||||||| | ||| |||||| | |||||| ||||||| |||||||    
T  40709563 gataaacaacttaattaagtgcttatatcataaccacttaatatataagtgcttatttataagctgtttctataacaaaagataaaat 40709476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 377
Target Start/End: Original strand, 49219083 - 49219122
Alignment:
Q  338 tataagttatttctacaacaaaatataaaatgaagtcaaa 377  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  49219083 tataagttatttctataacaaaatataaaataaagtcaaa 49219122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 47970248 - 47970302
Alignment:
Q  324 tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaac 378  Q
    ||||||| | ||| |||||| |||||||| ||||||| |||||||||||||||||    
T  47970248 tataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaac 47970302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 35533380 - 35533344
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcata 314  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  35533380 gtttccataaacaacttaattaagcgcttatagcata 35533344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 36460468 - 36460508
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataaccacttat 323  Q
    |||||||| |||||||| ||||||||||||||| |||||||    
T  36460468 gataaacagcttaattagacgcttatagcataaacacttat 36460508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 36461959 - 36461999
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataaccacttat 323  Q
    ||||| |||||||| ||| ||||||||||||||||||||||    
T  36461959 gataaccaacttaaataagcgcttatagcataaccacttat 36461999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 379
Target Start/End: Original strand, 34563137 - 34563235
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaaca 379  Q
    ||||||||||||||||||||||||||||||||| || ||||  ||||||| | |||||||||||||||||||  |||||  ||||||| ||||||||||    
T  34563137 gataaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttatatataagttatttctatgacaaaggataaaataaagtcaaaca 34563235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 379
Target Start/End: Original strand, 35869719 - 35869822
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 375  Q
    |||| |||| ||||||| ||||| |||||||||||||| |||||||  ||||||| | ||| ||||||  ||||||||||||||||||||||| || |||    
T  35869719 gtttggatacacaactttattaagcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattca 35869818  T
Q  376 aaca 379  Q
    ||||    
T  35869819 aaca 35869822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 2699246 - 2699290
Alignment:
Q  334 tatatataagttatttctacaacaaaatataaaatgaagtcaaac 378  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  2699246 tatatataagttatttctacaacaaaatataaaataaagttaaac 2699290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 368
Target Start/End: Original strand, 31884481 - 31884568
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataaccacttattata--agtacgtatatataagttatttctacaacaaaatataaaat 368  Q
    ||||||||||| |||||| | |||||||||||| | ||||| |||  ||| | ||| ||||||||||||||| |||||||||||||||    
T  31884481 gataaacaactcaattaagcacttatagcataagcgcttatcatacaagtgcatatgtataagttatttctataacaaaatataaaat 31884568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 373
Target Start/End: Complemental strand, 40280393 - 40280296
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagt 373  Q
    |||| ||| ||||| | |||||| |||||||||||  | | |||||  ||||||| | ||||||||||||||||||||||||||| ||||||| ||||    
T  40280393 gtttggattaacaattgaattaagcgcttatagcaatagcgcttatcatataagtgcctatatataagttatttctacaacaaaagataaaataaagt 40280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 35453805 - 35453709
Alignment:
Q  284 ataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaac 378  Q
    |||||||||||||||||  | ||||||||||| | ||| |  ||||||||| |||||||||  | |||||||||||||| ||||||| |||| ||||    
T  35453805 ataaacaacttaattaagtgattatagcataagcgcttgtcatataagtacttatatataatctgtttctacaacaaaagataaaataaagttaaac 35453709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 12361125 - 12361175
Alignment:
Q  327 aagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaa 377  Q
    |||||| ||||||||||||||||||| ||  ||| ||||||||||||||||    
T  12361125 aagtacttatatataagttatttctataaataaagataaaatgaagtcaaa 12361175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 31296004 - 31296041
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataa 315  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  31296004 gtttcgataaacaacttaattaaacgattatagtataa 31296041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 7008516 - 7008548
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataa 315  Q
    |||||||||||||||||| ||||||||||||||    
T  7008516 gataaacaacttaattaagcgcttatagcataa 7008548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 26820143 - 26820183
Alignment:
Q  338 tataagttatttctacaacaaaatataaaatgaagtcaaac 378  Q
    ||||||||||||||| ||||||| ||||||| |||||||||    
T  26820143 tataagttatttctataacaaaagataaaataaagtcaaac 26820183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 38561666 - 38561710
Alignment:
Q  334 tatatataagttatttctacaacaaaatataaaatgaagtcaaac 378  Q
    |||||||||||||||| || ||||||| ||||||| |||||||||    
T  38561666 tatatataagttatttatataacaaaagataaaataaagtcaaac 38561710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 27458 - 27559
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 375  Q
    |||| |||||||||||||| |||||||||||||||||| | |||||  | ||||| | ||| ||||||||||||||| |||| || ||||||| ||||||    
T  27458 gtttggataaacaacttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtca 27557  T
Q  376 aa 377  Q
    ||    
T  27558 aa 27559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 376
Target Start/End: Original strand, 30133933 - 30134031
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttattataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaa 376  Q
    |||| ||||||||||| ||||||| ||||||||||||| | ||||| ||||||   ||| |||||| ||||| |||||||||| ||||||| |||||||    
T  30133933 gtttggataaacaactcaattaaatgcttatagcataagcgcttatcataagtgtttatgtataagctatttttacaacaaaagataaaataaagtcaa 30134031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 6552453 - 6552366
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaat 368  Q
    ||||| |||||||||||||| |||| | |||||  ||||||  ||||||| | ||| || |||||||||||||||||||| |||||||    
T  6552453 gataagcaacttaattaaacacttaaatcataagtacttatcatataagtgcttatgtacaagttatttctacaacaaaagataaaat 6552366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 367
Target Start/End: Complemental strand, 22388092 - 22388001
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaa 367  Q
    |||| |||||||||||||||||| |||||||| ||||| |||||||  | ||||| | |||  ||||| |||||||| ||||||| ||||||    
T  22388092 gtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctataacaaaagataaaa 22388001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 2221846 - 2221884
Alignment:
Q  277 ggtttcgataaacaacttaattaaacgcttatagcataa 315  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  2221846 ggtttggataaacaacttaattaaacacttatagcataa 2221884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 3610880 - 3610826
Alignment:
Q  324 tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaac 378  Q
    ||||||| | ||| |||||| |||||||||||||||| ||||||||||| |||||    
T  3610880 tataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaac 3610826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 377
Target Start/End: Original strand, 42656402 - 42656498
Alignment:
Q  284 ataaacaacttaattaaacgcttatagcataaccacttat---tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaa 377  Q
    ||||||||||| ||||   ||||||||||||| | |||||    ||||| || |||||||||| |||||||| ||||||| ||||||| ||||||||    
T  42656402 ataaacaacttcattagtagcttatagcataagcgcttatcaaaataagcacttatatataagctatttctataacaaaagataaaataaagtcaaa 42656498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 991196 - 991236
Alignment:
Q  338 tataagttatttctacaacaaaatataaaatgaagtcaaac 378  Q
    |||||||||||||| |||||||| ||||||||||| |||||    
T  991196 tataagttatttctgcaacaaaagataaaatgaagacaaac 991236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 39591594 - 39591554
Alignment:
Q  337 atataagttatttctacaacaaaatataaaatgaagtcaaa 377  Q
    |||||||||||||||| ||||||| ||||||| ||||||||    
T  39591594 atataagttatttctataacaaaagataaaataaagtcaaa 39591554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 360
Target Start/End: Complemental strand, 47559791 - 47559712
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaa 360  Q
    ||||||||||||||||| | |||||||  |||| |||| ||  ||||||| | |||  ||||||||||||||||||||||    
T  47559791 gataaacaacttaattatatgcttataatataaacactaatcatataagtgcttatgaataagttatttctacaacaaaa 47559712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 26516180 - 26516272
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaat 368  Q
    |||| |||||||||||||||||| |||||||||||||| | |||||  ||||||| | ||| |||||| |||||||| ||||||| |||||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaat 26516272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 368
Target Start/End: Original strand, 29588778 - 29588854
Alignment:
Q  294 taattaaacgcttatagcataaccacttattata--agtacgtatatataagttatttctacaacaaaatataaaat 368  Q
    ||||||| |||||||||||||| ||||| |||||  ||| | ||| |||||| |||||||| |||||||||||||||    
T  29588778 taattaagcgcttatagcataaacactttttatataagtgcttatgtataagctatttctataacaaaatataaaat 29588854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 7550655 - 7550618
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataa 315  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  7550655 gtttagataaacaacttcattaaacgcttatagcataa 7550618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 13782054 - 13782009
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat 323  Q
    |||| |||||||||||||||||| ||||||| |||||| |||||||    
T  13782054 gtttagataaacaacttaattaagcgcttatggcataagcacttat 13782009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 376
Target Start/End: Complemental strand, 20982323 - 20982223
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 375  Q
    |||| |||||||||||| |||||  |||||||||||||   |||||  ||||||| | ||| |||||| |||||||| ||||||  ||||||| ||||||    
T  20982323 gtttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagtca 20982224  T
Q  376 a 376  Q
    |    
T  20982223 a 20982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 39257574 - 39257537
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataa 315  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  39257574 gtttggataaacaacttaattaagcgcttatagcataa 39257537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 11911801 - 11911833
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataa 315  Q
    ||||||||||||||||||||||| |||||||||    
T  11911801 gataaacaacttaattaaacgctaatagcataa 11911833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 23999039 - 23999075
Alignment:
Q  279 tttcgataaacaacttaattaaacgcttatagcataa 315  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  23999039 tttcgataaacaacttaattaaatgcttatagaataa 23999075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 27104594 - 27104527
Alignment:
Q  286 aaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttct 351  Q
    |||||||| |||| |||||||||||||||| |||||||  ||||||| | ||  ||||||||||||||    
T  27104594 aaacaactcaatttaacgcttatagcataaacacttatcatataagtgcttacgtataagttatttct 27104527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 375
Target Start/End: Complemental strand, 29115401 - 29115302
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttattataa--gtacgtatatataagttatttctacaacaaaatataaaatgaagtca 375  Q
    |||| ||||||||  |||||||  |||||||||||||| || |||| ||||  || | ||| |||||| ||||||||||||||||  |||||| ||||||    
T  29115401 gtttggataaacactttaattacgcgcttatagcataaacatttatcataaaagtgcttatgtataagctatttctacaacaaaaggtaaaataaagtca 29115302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 33234306 - 33234345
Alignment:
Q  338 tataagttatttctacaacaaaatataaaatgaagtcaaac 378  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  33234306 tataagttatttctacgacaaa-tataaaatgaagtcaaac 33234345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 378
Target Start/End: Original strand, 32975860 - 32975962
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 375  Q
    |||| |||||||||||||||||| || ||||||||||| | ||| |  |||||||   ||| ||||||||||||||  ||||||||||||||| ||||||    
T  32975860 gtttagataaacaacttaattaagcgtttatagcataagcgcttctcatataagtgtttatgtataagttatttctgtaacaaaatataaaataaagtca 32975959  T
Q  376 aac 378  Q
    |||    
T  32975960 aac 32975962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 375
Target Start/End: Complemental strand, 5885041 - 5884947
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 375  Q
    |||||||| |||| |||||| ||||||||| || ||  |||  ||||||| | ||| ||||| ||||||||| ||||||| ||||||||||||||    
T  5885041 gataaacagcttatttaaactcttatagcacaaacatgtatcatataagtgcatatgtataaattatttctataacaaaaaataaaatgaagtca 5884947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 378
Target Start/End: Original strand, 9027459 - 9027561
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttattata--agtacgtatatataagttatttctacaacaaaatataaaatgaagtca 375  Q
    |||| ||||||||  |||| ||| |||||||||||| | |||||||||||  ||| | ||| |||||| ||||||||||| | || ||||||| ||||||    
T  9027459 gtttggataaacagtttaagtaagcgcttatagcatgaacacttattatataagtgcttatctataagctatttctacaatagaagataaaataaagtca 9027558  T
Q  376 aac 378  Q
    |||    
T  9027559 aac 9027561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 8349841 - 8349807
Alignment:
Q  289 caacttaattaaacgcttatagcataaccacttat 323  Q
    |||||||||||| ||||||||||||||||||||||    
T  8349841 caacttaattaagcgcttatagcataaccacttat 8349807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 2785856 - 2785819
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataa 315  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  2785856 gtttggataaacaacttaattaatcgcttatagcataa 2785819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 24836339 - 24836286
Alignment:
Q  324 tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaa 377  Q
    ||||||||  ||| ||||||||||||||| ||||||| ||||||| ||||||||    
T  24836339 tataagtatttatgtataagttatttctataacaaaagataaaataaagtcaaa 24836286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 31461567 - 31461651
Alignment:
Q  285 taaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaa 367  Q
    ||||||||||||||||  |||||||  |||| |||||||  ||||||| | ||| |||||| |||||||| ||||||| ||||||    
T  31461567 taaacaacttaattaagtgcttatattataagcacttattgtataagtgcttatgtataagctatttctataacaaaagataaaa 31461651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 31828914 - 31828959
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat 323  Q
    ||||| ||||||||||||||||| |||||||||| ||| |||||||    
T  31828914 gtttctataaacaacttaattaagcgcttatagcgtaaacacttat 31828959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 2023812 - 2023725
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaat 368  Q
    |||||||||||||||||| | ||||||| |||  |||||||  |||||||    |||||||||||||||||| | ||||| |||||||    
T  2023812 gataaacaacttaattaagcacttatagtataggcacttatcatataagtgttcatatataagttatttctatagcaaaagataaaat 2023725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 9041600 - 9041568
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataa 315  Q
    |||||||||||||||||| ||||||||||||||    
T  9041600 gataaacaacttaattaagcgcttatagcataa 9041568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 24774698 - 24774742
Alignment:
Q  334 tatatataagttatttctacaacaaaatataaaatgaagtcaaac 378  Q
    |||||||||  |||||||| ||||||||||||||| |||||||||    
T  24774698 tatatataaactatttctataacaaaatataaaataaagtcaaac 24774742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 31958733 - 31958701
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatag 310  Q
    |||| ||||||||||||||||||||||||||||    
T  31958733 gttttgataaacaacttaattaaacgcttatag 31958701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 36641757 - 36641858
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 375  Q
    |||||||||||||||| |||||| | ||| | | ||||||   |||  ||||| ||| ||||||||||||||||||| ||||||| ||||||| ||||||    
T  36641757 gtttcgataaacaactaaattaacctcttttggtataaccgtgtatcatataattacttatatataagttatttctataacaaaagataaaataaagtca 36641856  T
Q  376 aa 377  Q
    ||    
T  36641857 aa 36641858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 367
Target Start/End: Complemental strand, 14128659 - 14128568
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaa 367  Q
    |||| |||||||||||||| |||| |||||||| ||||  ||||||  ||||||| | ||||| ||||||||||||| ||||| | ||||||    
T  14128659 gtttggataaacaacttaaataaatgcttatagtataaagacttatcatataagtgcttatatgtaagttatttctaaaacaacagataaaa 14128568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 5923372 - 5923409
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataa 315  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  5923372 gtttggataaacaacttaattatacgcttatagcataa 5923409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 21516255 - 21516292
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataa 315  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  21516255 gtttggataaacaacttaattaaacgcttataacataa 21516292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 40943523 - 40943470
Alignment:
Q  325 ataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaac 378  Q
    |||| ||| |||||||||| ||| |||||||||||| ||||||| |||||||||    
T  40943523 ataaatacctatatataagatatctctacaacaaaagataaaataaagtcaaac 40943470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 24775162 - 24775202
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataaccacttat 323  Q
    |||||| |||| |||||||| ||||||||||||||||||||    
T  24775162 gataaataactaaattaaacacttatagcataaccacttat 24775202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 26184645 - 26184734
Alignment:
Q  286 aaacaacttaattaaacgcttatagcataaccacttattataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaa 377  Q
    ||||||||||||| | |||||||||||||| | |||||  ||||||| ||| |||||  |||||||| || ||||  |||||| ||||||||    
T  26184645 aaacaacttaattgagcgcttatagcataaacgcttat--taagtacttatgtataaactatttctataagaaaaggtaaaataaagtcaaa 26184734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 52013784 - 52013816
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataa 315  Q
    ||||||||||||||||||||| |||||||||||    
T  52013784 gataaacaacttaattaaacgtttatagcataa 52013816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 376
Target Start/End: Complemental strand, 33197427 - 33197327
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 375  Q
    |||| ||||||||||| |||||||| |||||| ||||| | |||||  ||||||| | ||| |||||| |||||||| ||||||| ||| ||| ||||||    
T  33197427 gtttggataaacaactaaattaaacacttataacataaacgcttatcatataagtgcttatctataagctatttctataacaaaagatagaataaagtca 33197328  T
Q  376 a 376  Q
    |    
T  33197327 a 33197327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 5043732 - 5043694
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataaccactt 321  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  5043732 gataaacaactaaattaagcgcttatagcataaccactt 5043694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 28803646 - 28803592
Alignment:
Q  324 tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaac 378  Q
    ||||||| | ||||||||||||||||| | ||||||| ||||||| |||||||||    
T  28803646 tataagtgcttatatataagttatttcgataacaaaagataaaataaagtcaaac 28803592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Complemental strand, 1742151 - 1742118
Alignment:
Q  345 tatttctacaacaaaatataaaatgaagtcaaac 378  Q
    |||||||| |||||||||||||||||||||||||    
T  1742151 tatttctataacaaaatataaaatgaagtcaaac 1742118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 5942807 - 5942852
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttat 323  Q
    |||| |||||||||||||||||| ||||||| |||||| |||||||    
T  5942807 gtttggataaacaacttaattaagcgcttattgcataagcacttat 5942852  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 10143103 - 10143156
Alignment:
Q  325 ataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaac 378  Q
    |||||| | ||| ||||||||||||||| ||||||| ||||||| |||||||||    
T  10143103 ataagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaac 10143156  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 19333473 - 19333429
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccactta 322  Q
    |||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  19333473 gtttggataatcaactaaattaaacgcttatagcataagcactta 19333429  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 40158645 - 40158697
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttattataagt 330  Q
    |||| ||||||||||||||||    ||||||||||||||||||| ||||||||    
T  40158645 gtttggataaacaacttaatttgtagcttatagcataaccactttttataagt 40158697  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 382
Target Start/End: Original strand, 40943798 - 40943897
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataaccacttattataa-gtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaacatt 381  Q
    |||||||| ||||||||||| | |||| ||||| || |||| |||| || | ||| |||||| || ||||| ||||||| ||||||| ||||||||||||    
T  40943798 gataaacagcttaattaaacacatatatcataaacatttatcataaagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaacatt 40943896  T

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Target: scaffold0100 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 368
Target Start/End: Original strand, 42504 - 42591
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaat 368  Q
    |||||||||||||||||||| ||||||||| |  || ||||  ||||||| | ||| ||||||| ||||||| ||||||| |||||||    
T  42504 gataaacaacttaattaaacacttatagcagacacatttatcatataagtgcttatgtataagtcatttctataacaaaagataaaat 42591  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 29094270 - 29094308
Alignment:
Q  285 taaacaacttaattaaacgcttatagcataaccacttat 323  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  29094270 taaacagcttaattaaacgcttatagcataaacacttat 29094308  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 20143821 - 20143870
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttattata 327  Q
    |||| |||||||||||||| |||| | ||||||||||| |||||||||||    
T  20143821 gtttggataaacaacttaactaaaggtttatagcataaacacttattata 20143870  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 23269368 - 23269319
Alignment:
Q  278 gtttcgataaacaacttaattaaacgcttatagcataaccacttattata 327  Q
    |||| |||||||||||||| |||| | ||||||||||| |||||||||||    
T  23269368 gtttggataaacaacttaactaaaggtttatagcataaacacttattata 23269319  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 16790228 - 16790184
Alignment:
Q  324 tataagtacgtatatataagttatttctacaacaaaatataaaat 368  Q
    ||||||| | ||||||||||||||||||| ||||||| |||||||    
T  16790228 tataagtgcttatatataagttatttctataacaaaagataaaat 16790184  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 22723949 - 22723981
Alignment:
Q  283 gataaacaacttaattaaacgcttatagcataa 315  Q
    |||||||||||||||||| ||||||||||||||    
T  22723949 gataaacaacttaattaagcgcttatagcataa 22723981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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