View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7524_low_5 (Length: 350)
Name: NF7524_low_5
Description: NF7524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7524_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 5972478 - 5972798
Alignment:
| Q |
1 |
accaagtccaataatgttgaaagtgagaaagtgtgttaaaagttccacattcgataagaaatgacctgaacaagtgattacaagtcgaggcaatcctcat |
100 |
Q |
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| T |
5972478 |
accaagtccaataatgttgaacgtgggaaagtgtgttaaaagttccacattggataagaaatgacctgaacaagtgattaccagtcgaggcaatcctcat |
5972577 |
T |
|
| Q |
101 |
ctcacaaattgttatgtgatgttgcattacatcaaaccacaaactctaagatttccttccaaataacccaaatgcaagccatctagttcaattgaatgta |
200 |
Q |
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| T |
5972578 |
ctcacaagttgttatgtgatgttgcgttacgtcaaaccacaaactctaagatttccttccaaataacccaaatgcaagccatctagttcaattgaatgta |
5972677 |
T |
|
| Q |
201 |
aaaacgaatccttttta-ggaacactcttaagttgccaaacatattaagttgatcaaaaagattcatcgaaagctctgagtgaatgtctagccattgcat |
299 |
Q |
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| T |
5972678 |
aaaacgaatcccttttagggaacacttttaagttaccaaacatattaagttgatcaaaaagattcatcggaagttctgagtgaatgtctaaccattgcag |
5972777 |
T |
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| Q |
300 |
aacaagagacctaatactccc |
320 |
Q |
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| T |
5972778 |
aacaagagaccaaatactccc |
5972798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 31181623 - 31181557
Alignment:
| Q |
41 |
agttccacattcgataagaaatgacctgaacaagtgattacaagtcgaggcaatcctcatctcacaa |
107 |
Q |
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| T |
31181623 |
agttccacattggataagagatggcctgaacatgtgtttataagtgggggcaatcctcacctcacaa |
31181557 |
T |
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