View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7524_low_6 (Length: 321)
Name: NF7524_low_6
Description: NF7524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7524_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 184 - 303
Target Start/End: Original strand, 26677394 - 26677513
Alignment:
| Q |
184 |
gccattggtattatgctatgttgttatgttttcttattgggatcatataaatatagtatggtcatgtagaaagtatgcgcataaaaacaagtatcggtga |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26677394 |
gccattggtattatgctatgttgttatgttttcttattgggatcatataaatatagtatggtcatgtagaaagtatgcgcataaaaacaagtatcggtga |
26677493 |
T |
|
| Q |
284 |
ctgactttagaaccttggtt |
303 |
Q |
| |
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|||||||||||||||||||| |
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| T |
26677494 |
ctgactttagaaccttggtt |
26677513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 26677224 - 26677329
Alignment:
| Q |
14 |
atatggcaaaggaataagcattttcaccgacgggataaaagcctgcggtaaatgtacctttgggtgacattataatgtcttgttcgggtttttccactga |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26677224 |
atatggcaaaggaataagcattttcaccgacggaataaaagcctgcggtaaatgtacctttgggtgacattataatgtcttgttcgggtttttccactga |
26677323 |
T |
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| Q |
114 |
gaggga |
119 |
Q |
| |
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|||||| |
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| T |
26677324 |
gaggga |
26677329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 26688866 - 26688761
Alignment:
| Q |
14 |
atatggcaaaggaataagcattttcaccgacgggataaaagcctgcggtaaatgtacctttgggtgacattataatgtcttgttcgggtttttccactga |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26688866 |
atatggcaaaggaataagcattttcaccgacggaataaaagcctgcggtaaatgtacctttgggtgacattataatgtcttgttcgggtttttccactga |
26688767 |
T |
|
| Q |
114 |
gaggga |
119 |
Q |
| |
|
|||||| |
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| T |
26688766 |
gaggga |
26688761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 184 - 303
Target Start/End: Complemental strand, 26688696 - 26688578
Alignment:
| Q |
184 |
gccattggtattatgctatgttgttatgttttcttattgggatcatataaatatagtatggtcatgtagaaagtatgcgcataaaaacaagtatcggtga |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
26688696 |
gccattggtattatgctatgttgttatgttttcttattgggatcatataaatatagtatggtcatgtagaaagtatgcgcataaata-tagtatcggtga |
26688598 |
T |
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| Q |
284 |
ctgactttagaaccttggtt |
303 |
Q |
| |
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||||||||||| |||||||| |
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| T |
26688597 |
ctgactttagagccttggtt |
26688578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 26745844 - 26745949
Alignment:
| Q |
14 |
atatggcaaaggaataagcattttcaccgacgggataaaagcctgcggtaaatgtacctttgggtgacattataatgtcttgttcgggtttttccactga |
113 |
Q |
| |
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||||||| || ||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||| | ||||||||| | ||| || | |||||||| |
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| T |
26745844 |
atatggcgaatgaataagcattttcacctacgggataaaaacccgcggtgaatgtgcctttgggtgagactataatgtcattttcatgtctctccactga |
26745943 |
T |
|
| Q |
114 |
gaggga |
119 |
Q |
| |
|
|||||| |
|
|
| T |
26745944 |
gaggga |
26745949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 26693018 - 26692916
Alignment:
| Q |
14 |
atatggcaaaggaataagcattttcaccgacgggataaaagcctgcggtaaatgtacctttgggtgacattataatgtcttgttcgggtttttccactga |
113 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||||||||| || || || ||||| ||||| ||||| |||||||| |||| |||| ||||||| || || |
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| T |
26693018 |
atatggcgaatgaataagcattttcacctacgggataaaaacccgcagtgaatgtgccttttggtgatattataatatcttcttcgtgtttttcaaccga |
26692919 |
T |
|
| Q |
114 |
gag |
116 |
Q |
| |
|
||| |
|
|
| T |
26692918 |
gag |
26692916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 26700397 - 26700502
Alignment:
| Q |
14 |
atatggcaaaggaataagcattttcaccgacgggataaaagcctgcggtaaatgtacctttgggtgacattataatgtcttgttcgggtttttccactga |
113 |
Q |
| |
|
|||| |||||||||||||||||||| || || || || || ||||| || ||||||||||| ||||| | ||||||||| | |||| |||||| ||||| |
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| T |
26700397 |
atatagcaaaggaataagcattttctccaacagggtagaaacctgctgtgaatgtacctttaggtgagactataatgtcatcttcgaatttttcaactga |
26700496 |
T |
|
| Q |
114 |
gaggga |
119 |
Q |
| |
|
|||||| |
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|
| T |
26700497 |
gaggga |
26700502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 26715569 - 26715674
Alignment:
| Q |
14 |
atatggcaaaggaataagcattttcaccgacgggataaaagcctgcggtaaatgtacctttgggtgacattataatgtcttgttcgggtttttccactga |
113 |
Q |
| |
|
||||||| || |||||||||||||||| || ||||||||||||||||| ||||| |||| |||||| | ||||| ||||| ||| || | |||||||| |
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| T |
26715569 |
atatggcgaatgaataagcattttcacgtaccggataaaagcctgcggtgaatgtgccttcgggtgagactataacgtcttcttcatgtctctccactga |
26715668 |
T |
|
| Q |
114 |
gaggga |
119 |
Q |
| |
|
||||| |
|
|
| T |
26715669 |
caggga |
26715674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 26738809 - 26738875
Alignment:
| Q |
14 |
atatggcaaaggaataagcattttcaccgacgggataaaagcctgcggtaaatgtacctttgggtga |
80 |
Q |
| |
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||||||| || |||||||||||||| || || ||||||||||| ||||| ||||| ||||||||||| |
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|
| T |
26738809 |
atatggcgaatgaataagcattttcgcctacaggataaaagcccgcggtgaatgtgcctttgggtga |
26738875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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