View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7525_high_1 (Length: 798)
Name: NF7525_high_1
Description: NF7525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7525_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-166; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 2749086 - 2748726
Alignment:
| Q |
16 |
atagtaacatcttgcattactcattgacagcattaacagcttctaaattttaaatattttaattttaatttaatgcgttcttggcttctatcttcttgga |
115 |
Q |
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| T |
2749086 |
atagtaacatcttgcattactcattgacagcattaacagcttctaaattttaaatattttaattttaatttaatgcgttcttggcccctatcttcttgga |
2748987 |
T |
|
| Q |
116 |
aatttaggatttttagtattccttttctaaaatttctaaaacaaccctgaattttaaacttcgatttttctcacattgaatttcattcttgtttttgctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2748986 |
aatttaggatttttagtattccttttctaaaatttctaaaacaaccctgaattttaaacttcgatttttctctcattgaatttcattcttgtttttgctc |
2748887 |
T |
|
| Q |
216 |
atgtagcaatttcaataatgagcgaacaaatgataggatgaagtcccctaaaaacaagaaattaaaatgggatgaagcaccattaaattttattatttta |
315 |
Q |
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| T |
2748886 |
atgtagcaatttcaataatgagcgaacaaatgataggatgaagtcccctaaaaacaagaaattaaaataggatgaagtaccattaaattttattatttta |
2748787 |
T |
|
| Q |
316 |
atgtccatatctttt--nnnnnnntcattttggaataagaaattatagtcttcatttatgg |
374 |
Q |
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| T |
2748786 |
atgtccatatcttttaaaaaaaaatcattggggaataagaaattatagtctttatttatgg |
2748726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 607 - 780
Target Start/End: Complemental strand, 2748422 - 2748247
Alignment:
| Q |
607 |
gaagtgttcggagtttgaaccccaacccctatatacaacatctaatatctctaccaactgagttaagttcaaagcatattttaatcttattaactaacaa |
706 |
Q |
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| T |
2748422 |
gaagtgttcggagtttgaaccccgatccctatatacaacatctaatatctctaccaactgagttacgttcagagcatattttaatcttatttactaacaa |
2748323 |
T |
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| Q |
707 |
tattcaataattgatataaaattgatata--tatagaaaagctatagtttagttttctcggcattgcgcactgttt |
780 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
2748322 |
tatttaataattgatataaaattgatatatatatagaaaagctttagtttagttttctcggcattgcgcaccgttt |
2748247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 378 - 540
Target Start/End: Complemental strand, 2748662 - 2748498
Alignment:
| Q |
378 |
atagtttgtacctttgtgcaacattgcacacattagaaaaatccaannnnnnnnnnaagagaaaataatacatttgatgataannnnnnnnagacaagac |
477 |
Q |
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| T |
2748662 |
atagtttgtacctttgtgcaacattccacacattagaaaaatccaaatttctttttaagagaaaataatgcatttgatgataattttttttagacaagac |
2748563 |
T |
|
| Q |
478 |
catttgttcattataagaactgccctgctacactagaaacaat--atagaacattatacaaagac |
540 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
2748562 |
catttgctcattataagaactgccctgctacactagaaacaatacagagaacattatacaaagac |
2748498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 2740596 - 2740454
Alignment:
| Q |
19 |
gtaacatcttgcattactcattgacagcattaacagcttctaaattttaaatattttaattttaatttaatgcgttcttggcttctatcttcttggaaat |
118 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||| ||| ||| |||||||| |||||| ||| ||| | ||| |||| |
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| T |
2740596 |
gtaacatcttgcattactcattgacagcattaacaac-tctaaattttagata-------tttcatttaatgtgttcttagctcatatggttttgcaaat |
2740505 |
T |
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| Q |
119 |
ttaggatttttagtattccttttctaaaatttctaaaacaaccctgaatttt |
170 |
Q |
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|||| ||||| | | |||||||| |||||||||||||||| |||| |||||| |
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| T |
2740504 |
ttagcattttga-tcttccttttgtaaaatttctaaaacatccctcaatttt |
2740454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 623 - 677
Target Start/End: Original strand, 30004561 - 30004615
Alignment:
| Q |
623 |
gaaccccaacccctatatacaacatctaatatctctaccaactgagttaagttca |
677 |
Q |
| |
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||||||| ||||||||||| || || ||||||| |||||||||||| |||||||| |
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|
| T |
30004561 |
gaaccccgacccctatatataatatgtaatatccctaccaactgagctaagttca |
30004615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 609 - 677
Target Start/End: Complemental strand, 7388527 - 7388459
Alignment:
| Q |
609 |
agtgttcggagtttgaaccccaacccctatatacaacatctaatatctctaccaactgagttaagttca |
677 |
Q |
| |
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| T |
7388527 |
agtgttcggagtttgaaccccaacccctgcatataatatgcaatatccctaccaactgagttaagttca |
7388459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 609 - 676
Target Start/End: Complemental strand, 16280318 - 16280251
Alignment:
| Q |
609 |
agtgttcggagtttgaaccccaacccctatatacaacatctaatatctctaccaactgagttaagttc |
676 |
Q |
| |
|
||||| ||| ||| ||||||||||||||| ||| || || |||||||||||||||| |||||||||| |
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| T |
16280318 |
agtgtccggggttcgaaccccaacccctacatataaaatgcaatatctctaccaactcagttaagttc |
16280251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 677
Target Start/End: Original strand, 18026849 - 18026894
Alignment:
| Q |
632 |
cccctatatacaacatctaatatctctaccaactgagttaagttca |
677 |
Q |
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| T |
18026849 |
cccctatatataatatacaatatctctaccaactgagttaagttca |
18026894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 595 - 673
Target Start/End: Original strand, 8742808 - 8742886
Alignment:
| Q |
595 |
ttgtgaagaagcgaagtgttcggagtttgaaccccaacccctatatacaacatctaatatctctaccaactgagttaag |
673 |
Q |
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||||||| ||| | ||||| ||| ||| |||||||| |||||| ||| || || |||||||||||||||||||| |||| |
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| T |
8742808 |
ttgtgaaaaagtggagtgtgcggggttcgaaccccagcccctacatataatatgtaatatctctaccaactgagctaag |
8742886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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