View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7525_high_10 (Length: 237)

Name: NF7525_high_10
Description: NF7525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7525_high_10
NF7525_high_10
[»] chr8 (12 HSPs)
chr8 (91-237)||(7317010-7317157)
chr8 (9-65)||(40197324-40197380)
chr8 (9-89)||(35818695-35818778)
chr8 (9-65)||(10896487-10896543)
chr8 (9-65)||(12710389-12710445)
chr8 (9-65)||(37392817-37392873)
chr8 (9-86)||(7930959-7931039)
chr8 (9-59)||(32661205-32661255)
chr8 (9-59)||(33533663-33533713)
chr8 (9-59)||(38363831-38363881)
chr8 (9-65)||(26061888-26061944)
chr8 (9-65)||(38133009-38133065)
[»] chr4 (15 HSPs)
chr4 (9-86)||(48873745-48873825)
chr4 (9-86)||(48879049-48879129)
chr4 (9-65)||(48519162-48519218)
chr4 (9-85)||(13230260-13230339)
chr4 (9-85)||(45748066-45748145)
chr4 (9-65)||(41744492-41744548)
chr4 (9-65)||(47670110-47670166)
chr4 (9-65)||(55968271-55968327)
chr4 (9-87)||(39730564-39730645)
chr4 (10-65)||(41859318-41859373)
chr4 (9-59)||(27555181-27555231)
chr4 (9-59)||(32953277-32953327)
chr4 (7-59)||(37014652-37014704)
chr4 (9-65)||(43723012-43723068)
chr4 (9-65)||(45596016-45596072)
[»] chr1 (17 HSPs)
chr1 (9-93)||(47031573-47031660)
chr1 (9-87)||(5806547-5806628)
chr1 (9-86)||(6911206-6911286)
chr1 (9-86)||(46666429-46666509)
chr1 (9-65)||(9115582-9115638)
chr1 (9-65)||(20260357-20260413)
chr1 (9-65)||(38964950-38965006)
chr1 (9-65)||(39930202-39930258)
chr1 (9-65)||(52699736-52699792)
chr1 (9-59)||(8331765-8331815)
chr1 (9-59)||(25474006-25474056)
chr1 (9-59)||(32824672-32824722)
chr1 (9-86)||(36361504-36361584)
chr1 (16-65)||(13653596-13653645)
chr1 (10-59)||(45813666-45813715)
chr1 (9-65)||(51445350-51445406)
chr1 (9-65)||(52630518-52630574)
[»] chr5 (11 HSPs)
chr5 (10-88)||(14207093-14207174)
chr5 (9-87)||(29543286-29543367)
chr5 (9-86)||(4765831-4765911)
chr5 (9-59)||(16720957-16721007)
chr5 (9-86)||(18411929-18412009)
chr5 (9-65)||(555977-556033)
chr5 (9-65)||(6091459-6091515)
chr5 (9-65)||(11855926-11855982)
chr5 (9-65)||(19065776-19065832)
chr5 (9-65)||(22936183-22936239)
chr5 (9-65)||(27481101-27481157)
[»] chr3 (10 HSPs)
chr3 (9-87)||(33218184-33218265)
chr3 (9-86)||(26848742-26848822)
chr3 (9-65)||(11239391-11239447)
chr3 (9-65)||(20414736-20414792)
chr3 (9-65)||(47115128-47115184)
chr3 (9-86)||(44952028-44952108)
chr3 (9-59)||(46359702-46359752)
chr3 (9-65)||(1098943-1098999)
chr3 (9-65)||(40908010-40908066)
chr3 (9-65)||(48340028-48340084)
[»] chr6 (7 HSPs)
chr6 (9-86)||(10246387-10246467)
chr6 (9-85)||(1316740-1316819)
chr6 (9-59)||(2657450-2657500)
chr6 (21-86)||(8029023-8029091)
chr6 (9-59)||(18897671-18897721)
chr6 (9-65)||(14170759-14170815)
chr6 (9-65)||(14781881-14781937)
[»] chr2 (18 HSPs)
chr2 (9-86)||(346616-346696)
chr2 (9-59)||(4875526-4875576)
chr2 (9-86)||(6171511-6171591)
chr2 (9-65)||(638338-638394)
chr2 (10-85)||(23943884-23943962)
chr2 (9-65)||(37233174-37233230)
chr2 (9-65)||(45408995-45409051)
chr2 (10-65)||(20426754-20426809)
chr2 (10-65)||(27358234-27358289)
chr2 (9-59)||(14777769-14777819)
chr2 (9-85)||(41729401-41729480)
chr2 (9-65)||(9734117-9734173)
chr2 (9-65)||(11763671-11763727)
chr2 (9-65)||(17965727-17965783)
chr2 (9-65)||(18713927-18713983)
chr2 (9-65)||(28311967-28312023)
chr2 (9-65)||(37192266-37192322)
chr2 (21-65)||(40951142-40951186)
[»] scaffold0006 (2 HSPs)
scaffold0006 (9-65)||(201670-201726)
scaffold0006 (16-65)||(143357-143406)
[»] chr7 (14 HSPs)
chr7 (9-65)||(11329737-11329793)
chr7 (9-65)||(18823906-18823962)
chr7 (9-65)||(27214126-27214182)
chr7 (9-65)||(28904457-28904513)
chr7 (9-65)||(33378578-33378634)
chr7 (9-65)||(34930738-34930794)
chr7 (9-65)||(35488460-35488516)
chr7 (9-65)||(43948989-43949045)
chr7 (9-65)||(45045370-45045426)
chr7 (9-59)||(45265319-45265369)
chr7 (9-59)||(48160844-48160894)
chr7 (9-65)||(25924908-25924964)
chr7 (9-65)||(27248037-27248093)
chr7 (9-65)||(45448686-45448742)
[»] scaffold0702 (1 HSPs)
scaffold0702 (9-84)||(3836-3914)
[»] scaffold0662 (1 HSPs)
scaffold0662 (9-84)||(4188-4266)


Alignment Details
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 7317157 - 7317010
Alignment:
Q  91 taaattaacaaccgacattagacttaatccctttagacgcggtgtgaggtatattgaaaattttatgagggtacaaaacat-aaagaaaatagagaatac 189  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7317157 taaattaacaaccgacattagacttaatccctttagacgcagtgtgaggtatattgaaaattttatgagggtacaaaacataaaagaaaatagagaatac 7317058  T
Q  190 aaatccctcccaaggatttccccaacaaacaaattgttcttcttttac 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7317057 aaatccctcccaaggatttccccaacaaacaaattgttcttcttttac 7317010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 40197324 - 40197380
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||||||| ||||||||||||| |||||    
T  40197324 gaataaaattcccatctttatattccaaagaatattattcctaggaataaatttggt 40197380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 35818695 - 35818778
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaaata 89  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | |||||||||||||||| ||||    
T  35818695 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccttaata 35818778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 10896487 - 10896543
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  10896487 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggt 10896543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 12710445 - 12710389
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  12710445 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 12710389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 37392817 - 37392873
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  37392817 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 37392873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 7931039 - 7930959
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||| |||||| |||||    | ||||||||||||||||||    
T  7931039 gaataaaattctcatctttatattccaaagaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccctaa 7930959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 32661205 - 32661255
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||||||||||    
T  32661205 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaa 32661255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 33533663 - 33533713
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||||||||||||||||| || ||||| || |||||||||||||    
T  33533663 gaataaaattcacatctttatattcaaaggaataatattcctaggaataaa 33533713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 38363881 - 38363831
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||||||||||    
T  38363881 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaa 38363831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 26061944 - 26061888
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||||||||||||| |||||    
T  26061944 gaataaaattctcatctttatattacaaggaatgttattcctaggaataaatttggt 26061888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 38133009 - 38133065
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||| ||||||| |||||    
T  38133009 gaataaaattctcatctttatattccaaggaatgttattcctaagaataaatttggt 38133065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 48873825 - 48873745
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    ||||||||||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | ||||||||||||||||||    
T  48873825 gaataatattcccatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaa 48873745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 48879129 - 48879049
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    ||||||||||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | ||||||||||||||||||    
T  48879129 gaataatattcccatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaa 48879049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 48519162 - 48519218
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| ||||||||||||||||||||| |||| ||| ||||||||||||| |||||    
T  48519162 gaataaaattcacatctttatattccaaggaatgttattcctaggaataaatttggt 48519218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 13230260 - 13230339
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacacccta 85  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | |||||||||||||||||    
T  13230260 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 13230339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 45748066 - 45748145
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacacccta 85  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | |||||||||||||||||    
T  45748066 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 45748145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 41744492 - 41744548
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| ||||||||||||||||||||| ||| |||||| |||||| |||||    
T  41744492 gaataaaattctcatctttatattccaatgaatgttattcctagaaataaatttggt 41744548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 47670166 - 47670110
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  47670166 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 47670110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 55968271 - 55968327
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  55968271 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 55968327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 39730564 - 39730645
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaaa 87  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| ||| |    | |||||||||||||||||||    
T  39730564 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccctaaa 39730645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 41859318 - 41859373
Alignment:
Q  10 aataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    ||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  41859318 aataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggt 41859373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 27555231 - 27555181
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||||||||||    
T  27555231 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaa 27555181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 32953327 - 32953277
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||| ||||||||||||||||||||||||| | |||| ||||||    
T  32953327 gaataaaattcccatctttatattccaatgaatattatttctagaaataaa 32953277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 37014652 - 37014704
Alignment:
Q  7 tcgaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||||| |||| ||||||||||||||||  ||||||| || ||||||||||    
T  37014652 tcgaataaaattcgcatctttatattccaaaaaatattattcttaggaataaa 37014704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 43723068 - 43723012
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||| |||||| |||||    
T  43723068 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttggt 43723012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 45596072 - 45596016
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||| ||||||| |||||    
T  45596072 gaataaaattcccatctttatattccaaggaatgttattcctaagaataaatttggt 45596016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 47031660 - 47031573
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaaatagtaa 93  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | |||||||||||||||||| ||||||    
T  47031660 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaagtagtaa 47031573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 5806547 - 5806628
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaaa 87  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | |||||||||||||||||||    
T  5806547 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaaa 5806628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 6911286 - 6911206
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | ||||||||||||||||||    
T  6911286 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaa 6911206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 46666509 - 46666429
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | ||||||||||||||||||    
T  46666509 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaa 46666429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 9115638 - 9115582
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  9115638 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggt 9115582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 20260357 - 20260413
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  20260357 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 20260413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 38964950 - 38965006
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  38964950 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 38965006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 39930258 - 39930202
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  39930258 gaataaaattcccatctttatattccaaagaatgttattcctaggaataaatttggt 39930202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 52699736 - 52699792
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  52699736 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggt 52699792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 8331815 - 8331765
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||||||||||    
T  8331815 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaa 8331765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 25474056 - 25474006
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||||||||||    
T  25474056 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaa 25474006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 32824722 - 32824672
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||||||||||    
T  32824722 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaa 32824672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 36361584 - 36361504
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    |||||| |||| ||| |||||||||||| |||| ||| ||||||||||||| |||||    | ||||||||||||||||||    
T  36361584 gaataaaattcccatttttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaa 36361504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 13653645 - 13653596
Alignment:
Q  16 attcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  13653645 attctcatctttatattccaaggaatgttattcctaggaataaatttggt 13653596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 45813666 - 45813715
Alignment:
Q  10 aataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    ||||| ||||||||||||||||| |||||||| ||| ||||| |||||||    
T  45813666 aataaaattcacatctttatatttcaatgaatgttattcctaagaataaa 45813715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 51445350 - 51445406
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| ||||| |||||||||| |||| ||| ||||||||||||| |||||    
T  51445350 gaataaaattctcatctatatattccaaggaatgttattcctaggaataaatttggt 51445406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 52630574 - 52630518
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||| |||||| |||||    
T  52630574 gaataaaattctcatctttatattccaaggaatgttattcctagaaataaatttggt 52630518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 14207093 - 14207174
Alignment:
Q  10 aataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaaat 88  Q
    ||||| |||| ||||||||||||||||||||| ||| ||||||||||||| || ||    | ||||||||||||||||||||    
T  14207093 aataaaattctcatctttatattccaatgaatgttattcctaggaataaattttgtaaacttgaaacaaacacaccctaaat 14207174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 29543286 - 29543367
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaaa 87  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | |||||||||||||||||||    
T  29543286 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaaa 29543367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 4765831 - 4765911
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | ||||||||||||||||||    
T  4765831 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaa 4765911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 16720957 - 16721007
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||||||| ||||||||||||||||| ||| |||||||||||||    
T  16720957 gaataaaattcacatttttatattccaatgaatgttattcctaggaataaa 16721007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 18412009 - 18411929
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | ||||||||||||||||||    
T  18412009 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaa 18411929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 555977 - 556033
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  555977 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 556033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 6091515 - 6091459
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  6091515 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggt 6091459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 11855926 - 11855982
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  11855926 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggt 11855982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 19065776 - 19065832
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  19065776 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 19065832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 22936183 - 22936239
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  22936183 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 22936239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 27481157 - 27481101
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  27481157 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggt 27481101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 33218184 - 33218265
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaaa 87  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | |||||||||||||||||||    
T  33218184 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaaa 33218265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 26848822 - 26848742
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | ||||||||||||||||||    
T  26848822 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaa 26848742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 11239391 - 11239447
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  11239391 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggt 11239447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 20414736 - 20414792
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  20414736 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 20414792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 47115128 - 47115184
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  47115128 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 47115184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 44952108 - 44952028
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||| ||||||| |||||    | ||||||||||||||||||    
T  44952108 gaataaaattcccatctttatattccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacaccctaa 44952028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 46359752 - 46359702
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||||||||||    
T  46359752 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaa 46359702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 1098999 - 1098943
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||| ||||||| |||||    
T  1098999 gaataaaattcccatctttatattccaaggaatgttattcctaagaataaatttggt 1098943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 40908066 - 40908010
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||||||||||||| |||||    
T  40908066 gaataaaattcccatctttatatttcaaggaatgttattcctaggaataaatttggt 40908010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 48340028 - 48340084
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| ||||||||||||| || |||| ||| ||||||||||||| |||||    
T  48340028 gaataaaattctcatctttatattctaaggaatgttattcctaggaataaatttggt 48340084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 10246387 - 10246467
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | ||||||||||||||||||    
T  10246387 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaa 10246467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 1316819 - 1316740
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacacccta 85  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | |||||||||||||||||    
T  1316819 gaataaaattctcatctttatattccaaagaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 1316740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 2657500 - 2657450
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||||||||||    
T  2657500 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaa 2657450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 8029091 - 8029023
Alignment:
Q  21 catctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    |||||||||||||||| |||| ||| ||||||||||||| |||||    | ||||||||||||||||||    
T  8029091 catctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaa 8029023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 18897721 - 18897671
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||||||||||    
T  18897721 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaa 18897671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 14170815 - 14170759
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||| |||||| |||||    
T  14170815 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttggt 14170759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 14781881 - 14781937
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| ||||||||| ||||||||||| ||| ||| ||||||||| |||||    
T  14781881 gaataaaattctcatctttatgttccaatgaatgttattcccaggaataaatttggt 14781937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 346616 - 346696
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | ||||||||||||||||||    
T  346616 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaa 346696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 4875576 - 4875526
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| ||||||||||||||||||||| |||||||| ||||| |||||||    
T  4875576 gaataaaattcacatctttatattccaaagaatattattcctaagaataaa 4875526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 6171591 - 6171511
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacaccctaa 86  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | ||||||||||||||||||    
T  6171591 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctaa 6171511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 638394 - 638338
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  638394 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 638338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 23943962 - 23943884
Alignment:
Q  10 aataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacacccta 85  Q
    ||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    | |||||||||||||||||    
T  23943962 aataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 23943884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 37233230 - 37233174
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  37233230 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 37233174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 45409051 - 45408995
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| ||||||||||||||||| ||| ||| ||||||||||||| |||||    
T  45409051 gaataaaattctcatctttatattccaataaatgttattcctaggaataaatttggt 45408995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 20426754 - 20426809
Alignment:
Q  10 aataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    ||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  20426754 aataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 20426809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 27358234 - 27358289
Alignment:
Q  10 aataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    ||||| |||| ||||||||||||||||| ||| ||| ||||||||||||| |||||    
T  27358234 aataaaattctcatctttatattccaataaatgttattcctaggaataaatttggt 27358289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 14777769 - 14777819
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||||||||||    
T  14777769 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaa 14777819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 41729401 - 41729480
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt---gtcgaaacaaacacacccta 85  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||| ||||||| |||||    | |||||||||||||||||    
T  41729401 gaataaaattcccatctttatattccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacacccta 41729480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 9734117 - 9734173
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||| |||||| |||||    
T  9734117 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttggt 9734173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 11763671 - 11763727
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||| ||||||| |||||    
T  11763671 gaataaaattctcatctttatattccaaggaatgttattcctaagaataaatttggt 11763727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 17965783 - 17965727
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||| |||||| |||||    
T  17965783 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttggt 17965727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 18713927 - 18713983
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    ||||||||||| |||||||||||||||| |||| ||| |||||  |||||| |||||    
T  18713927 gaataatattctcatctttatattccaaggaatgttattcctataaataaatttggt 18713983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 28311967 - 28312023
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||| ||||||| |||||    
T  28311967 gaataaaattcccatctttatattccaaggaatgttattcctatgaataaatttggt 28312023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 37192322 - 37192266
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||| |||||| |||||    
T  37192322 gaataaaattctcatctttatattccaaggaatgttattcctagaaataaatttggt 37192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 40951142 - 40951186
Alignment:
Q  21 catctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  40951142 catctttatattccaaggaatgttattcctaggaataaatttggt 40951186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 201726 - 201670
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  201726 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 201670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 143406 - 143357
Alignment:
Q  16 attcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  143406 attctcatctttatattccaaggaatgttattcctaggaataaatttggt 143357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 11329793 - 11329737
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  11329793 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggt 11329737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 18823962 - 18823906
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  18823962 gaataaaattctcatctttatattccaaagaatgttattcctaggaataaatttggt 18823906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 27214126 - 27214182
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  27214126 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 27214182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 28904457 - 28904513
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  28904457 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggt 28904513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 33378634 - 33378578
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  33378634 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 33378578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 34930738 - 34930794
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  34930738 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 34930794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 35488460 - 35488516
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  35488460 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 35488516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 43949045 - 43948989
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  43949045 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggt 43948989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 45045426 - 45045370
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||||||| ||||| ||||||| |||||    
T  45045426 gaataaaattcccatctttatattccaaggaatattattcctaagaataaatttggt 45045370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 45265319 - 45265369
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||||||||||    
T  45265319 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaa 45265369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 48160844 - 48160894
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaa 59  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||||||||||    
T  48160844 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaa 48160894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 25924908 - 25924964
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| || |||||||||| |||||    
T  25924908 gaataaaattctcatctttatattccaaggaatgttattcttaggaataaatttggt 25924964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 27248093 - 27248037
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| ||||||||||||| || |||| ||| ||||||||||||| |||||    
T  27248093 gaataaaattcccatctttatattctaaggaatgttattcctaggaataaatttggt 27248037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 45448742 - 45448686
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggt 65  Q
    |||||| |||| |||||||||||||||| |||| ||| || |||||||||| |||||    
T  45448742 gaataaaattcccatctttatattccaaggaatgttattcataggaataaatttggt 45448686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 3836 - 3914
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggtg---tcgaaacaaacacaccct 84  Q
    |||||| ||||  ||||||||||||||| |||| ||| || |||||||||| ||||||   | ||||||||||||||||    
T  3836 gaataaaattcctatctttatattccaaggaatgttattcataggaataaatttggtgcacttgaaacaaacacaccct 3914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 4266 - 4188
Alignment:
Q  9 gaataatattcacatctttatattccaatgaatattactcctaggaataaacttggtg---tcgaaacaaacacaccct 84  Q
    |||||| ||||  ||||||||||||||| |||| ||| || |||||||||| ||||||   | ||||||||||||||||    
T  4266 gaataaaattcctatctttatattccaaggaatgttattcataggaataaatttggtgcacttgaaacaaacacaccct 4188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University