View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7525_high_11 (Length: 226)
Name: NF7525_high_11
Description: NF7525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7525_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 21145018 - 21144825
Alignment:
| Q |
18 |
ccttaaatccacctcttgtacatcttcttttaacctagaaattctctcttacatcgaaccatgctcctccttgttccactctctaagccttcctttaacc |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21145018 |
ccttaaatccacctcttgtatatcttcttttaacctagaaattctctcttacatcgaaccatactcctccttgttccactctctaagccttcctttaacc |
21144919 |
T |
|
| Q |
118 |
ccttttagtttctcttttaacacaaatcccatccatcacgttaaatgttgtgaattccacacctcctcaaccacctctttgatttgcctattat |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21144918 |
ccttttagtttctcttttaacagaaatcccatccatcacgttaaatgttgtgaattccacacctcctcaaccacctctttgatttgcctattat |
21144825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University