View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7525_high_3 (Length: 534)
Name: NF7525_high_3
Description: NF7525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7525_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 17 - 528
Target Start/End: Original strand, 31263754 - 31264265
Alignment:
| Q |
17 |
aaccaacagcttgaagtagatgagcacaattgtacaagcaagtaatctatttcttttctgtgtgaaaaattattcatcagtagttttgatgaccacacaa |
116 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31263754 |
aaccaacagcttgaagcagatgagcataattgtacaagcaaataatctatttcttttctaagtgaaaaattattcatcagtagttttgatgaccacacaa |
31263853 |
T |
|
| Q |
117 |
cattaaagttaagacggtgatacaatagaaaactttaataatattaatgcaacttaataaattttcaacaattattgtttacgcttaattgcgatatgat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31263854 |
cattaaagttaagacggtgatacaatagaaaactttaataatattaatgcaacttaataaattttcaacaattattgtttacgcttaattgcgatatgat |
31263953 |
T |
|
| Q |
217 |
ctatacaattgattaacgatgacaatagtataaacagatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaaatggtac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31263954 |
ctatacaattgattaacgatgacaatagtataaacagatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaaatggtac |
31264053 |
T |
|
| Q |
317 |
aatagatgaaggtttgaggagatagtcctaacaatatttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattacttatc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31264054 |
aatagatgaaggtttgaggagatagtcctaacaatatttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattactcatc |
31264153 |
T |
|
| Q |
417 |
ggataaattaccatctttccaatattacggagatgctctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgcatctgag |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
31264154 |
ggataaattaccatctttccaatattacggagatgctctattccatgtctttcaactttccttgaattcagacttctgttgcgacaaatttgcatttgag |
31264253 |
T |
|
| Q |
517 |
tgttcttctcac |
528 |
Q |
| |
|
||||||| |||| |
|
|
| T |
31264254 |
tgttcttgtcac |
31264265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 253 - 522
Target Start/End: Original strand, 12212406 - 12212663
Alignment:
| Q |
253 |
gatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttga-ggagatagtcctaacaat |
351 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||||| ||||| ||||| ||||||||||||||| ||| ||||| | |||||||||||||||||| |
|
|
| T |
12212406 |
gatggatgaggaaatataaaaaccaaggtagaataattatatagatggatagttgaaatggtacaatacatgt-ggtttaatggagatagtcctaacaat |
12212504 |
T |
|
| Q |
352 |
atttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagat |
450 |
Q |
| |
|
| ||| ||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||| || | |||| |||||||| |
|
|
| T |
12212505 |
a-----------gatagagat--agtcataacattgagaaccataaatataaattattactcatcggataaatcatcatctgtctagtattgacggagat |
12212591 |
T |
|
| Q |
451 |
gctctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgcatctgagtgttct |
522 |
Q |
| |
|
||||||||||| || |||||||| | ||||||| |||| ||||||||||| ||||||||||||| |||||| |
|
|
| T |
12212592 |
gctctattccacgtaattcaacttcccttgaatttagacatctgttgagacgaatttgcatctgattgttct |
12212663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 253 - 522
Target Start/End: Complemental strand, 13815186 - 13814928
Alignment:
| Q |
253 |
gatgcatgaggaaatataa-aaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttga-ggagatagtcctaacaa |
350 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||||||| ||| ||||| ||||| ||||||||||||||| ||| ||||| | ||||||||||||||||| |
|
|
| T |
13815186 |
gatggatgaggaaatataacaaaccaaggtagaacatttatatagatggatagttgaaatggtacaatacatgt-ggtttaatggagatagtcctaacaa |
13815088 |
T |
|
| Q |
351 |
tatttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggaga |
449 |
Q |
| |
|
|| ||| ||||| |||||||||| ||||| |||||| |||||||||||||| ||| ||||||| ||||||| |||| |||| ||||||| |
|
|
| T |
13815087 |
ta-----------gatggagat--agtcataacactgagaaccataagtataaattattactcatcagataaatcaccatctatccagtattgacggaga |
13815001 |
T |
|
| Q |
450 |
tgctctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgcatctgagtgttct |
522 |
Q |
| |
|
|||||||||||| || |||||||| | ||||||| |||| ||||||||||| ||||||||||||| |||||| |
|
|
| T |
13815000 |
tgctctattccacgtaattcaacttcccttgaatttagacatctgttgagacgaatttgcatctgattgttct |
13814928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 253 - 522
Target Start/End: Original strand, 22144589 - 22144846
Alignment:
| Q |
253 |
gatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttga-ggagatagtcctaacaat |
351 |
Q |
| |
|
|||| ||||||| ||||| |||| || |||||||||||| ||||| ||||| ||||||||||||||| ||| ||||| | |||||||||||||||||| |
|
|
| T |
22144589 |
gatggatgaggacatatataaactaaggtagaacaattatatagatggatagttgaaatggtacaatacatgt-ggtttaatggagatagtcctaacaat |
22144687 |
T |
|
| Q |
352 |
atttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagat |
450 |
Q |
| |
|
| ||| ||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||| |||| |||| |||||||| |
|
|
| T |
22144688 |
a-----------gatggagat--agtcataacattgcgaaccataaatataaattattactcatcggataaatcaccatctgtccagtattgacggagat |
22144774 |
T |
|
| Q |
451 |
gctctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgcatctgagtgttct |
522 |
Q |
| |
|
||||||||||| || |||||||| | ||||||| |||| | ||||||||| ||||||||||||| |||||| |
|
|
| T |
22144775 |
gctctattccacgtaattcaacttcccttgaatttagacatttgttgagacgaatttgcatctgattgttct |
22144846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 238 - 333
Target Start/End: Complemental strand, 15852342 - 15852247
Alignment:
| Q |
238 |
acaatagtataaacagatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttga |
333 |
Q |
| |
|
||||| |||||||| |||| |||| |||||||||||||||| |||||||||||| ||| | ||||| ||||||||||||||| ||| ||||||| |
|
|
| T |
15852342 |
acaatggtataaacggatggatgatgaaatataaaaaccaaggtagaacaattatatacatggatagttgaaatggtacaatacatgtgggtttga |
15852247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 15852407 - 15852351
Alignment:
| Q |
107 |
gaccacacaacattaaagttaagacggtgatacaatagaaaactttaataatattaa |
163 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| ||||||||| |||| |
|
|
| T |
15852407 |
gaccacacaacattaaagttaagactatcatacaatagaaaaatttaataatgttaa |
15852351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University