View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7525_high_8 (Length: 279)
Name: NF7525_high_8
Description: NF7525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7525_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 26120098 - 26119844
Alignment:
| Q |
19 |
ggatgggttggtctagtggcgtttttaccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttgga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26120098 |
ggatgggttggtctagtggcgtttttaccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttgga |
26119999 |
T |
|
| Q |
119 |
ccgtgtggcagcacgactttcgaaggagaaggcatgggaccaagtcgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcat |
218 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26119998 |
ccgtgtggcagcacgacttttgaaggagaaagcatgggaccaagtcgttttcaacgaggaactctttcatccatcatatcctggttatgacgggcttcat |
26119899 |
T |
|
| Q |
219 |
gctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttca |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26119898 |
gctgctaaaagaactatggatatatatctttttatgaatagcagagttcttttca |
26119844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 26096811 - 26096556
Alignment:
| Q |
19 |
ggatgggttggtctagtggcgtttttaccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttgga |
118 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096811 |
ggatgggttggtctagtggtgtttataccaggaggatatttgtttacaattgtggtttcttctatatcagaccaaccattccttcaattgagcttttgga |
26096712 |
T |
|
| Q |
119 |
ccgtgtggcagcacgactttcgaaggagaaggcatgggaccaagtcgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcat |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |
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| T |
26096711 |
ccgtgtggcagcacgactttcgaaggagaaagcatgggaccaagtcgttttcaacgaggaactcttttatccgtcgcatcctggttatgacgggcttcat |
26096612 |
T |
|
| Q |
219 |
gctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcag |
274 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096611 |
gcttctaaaagaactatggatatatatctttttatgaacagcagagttcttttcag |
26096556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 26084536 - 26084281
Alignment:
| Q |
19 |
ggatgggttggtctagtggcgtttttaccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttgga |
118 |
Q |
| |
|
||||||||||||||| | ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084536 |
ggatgggttggtctactaacgtttataccacgaggatatttgtttacaattctggtttcttctatatcagaccaaccattccttcaattgagcttttgga |
26084437 |
T |
|
| Q |
119 |
ccgtgtggcagcacgactttcgaaggagaaggcatgggaccaagtcgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcat |
218 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084436 |
ccgtgtggcagcacgactttcgaagggtaatgcatgggaccaagccgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcat |
26084337 |
T |
|
| Q |
219 |
gctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcag |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084336 |
gctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcag |
26084281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 51 - 273
Target Start/End: Complemental strand, 26126723 - 26126501
Alignment:
| Q |
51 |
aggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaagg |
150 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| | |
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| T |
26126723 |
aggatatgggtttacaattctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggctgcacgactttcaaaagagaatg |
26126624 |
T |
|
| Q |
151 |
catgggaccaagtcgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttt |
250 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126623 |
catgggaccaaggcgttttcaacgaggaactcttttatccgtcgcatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttt |
26126524 |
T |
|
| Q |
251 |
tatgaacagcagagttcttttca |
273 |
Q |
| |
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|||||| || | ||||||||||| |
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| T |
26126523 |
tatgaatagtaaagttcttttca |
26126501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 51 - 273
Target Start/End: Complemental strand, 26064779 - 26064557
Alignment:
| Q |
51 |
aggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaagg |
150 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| | ||||| |||||||| | |
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| T |
26064779 |
aggatatgggtttacaattctggtttcttctatattagaccaaccattccttcaattgagcttttggatcgtgtggcggcaaggctttccaaggagaaag |
26064680 |
T |
|
| Q |
151 |
catgggaccaagtcgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttt |
250 |
Q |
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|||||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |
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| T |
26064679 |
catgggaccaagccgtttttaacgaggaactcttttatccatcgcatcctggttatgacgggcttcatgctgctaaaaggactatggatatgtacctttt |
26064580 |
T |
|
| Q |
251 |
tatgaacagcagagttcttttca |
273 |
Q |
| |
|
|||||| || | ||||||||||| |
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| T |
26064579 |
tatgaatagtaaagttcttttca |
26064557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 44 - 273
Target Start/End: Complemental strand, 26036138 - 26035909
Alignment:
| Q |
44 |
taccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaag |
143 |
Q |
| |
|
||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||| |
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|
| T |
26036138 |
taccatgaggatatgggtttacaattccggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtcgcgacacggctttccaag |
26036039 |
T |
|
| Q |
144 |
gagaaggcatgggaccaagtcgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatat |
243 |
Q |
| |
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||| ||||||||||||| |||||||||||||||||| ||| |||| ||||| ||||||||||| |||||||||||||||| ||||||||||||||| | |
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| T |
26036038 |
gaggttgcatgggaccaagccgttttcaacgaggaactattttatccgtcacaccctggttatgaagggcttcatgctgctagaagaactatggatatgt |
26035939 |
T |
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| Q |
244 |
atctttttatgaacagcagagttcttttca |
273 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| |
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|
| T |
26035938 |
atctctttatgaacagcaaagttcttttca |
26035909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 87 - 259
Target Start/End: Complemental strand, 6773416 - 6773244
Alignment:
| Q |
87 |
agaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaaggcatgggaccaagtcgttttcaacgaggaactctttc |
186 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || || || | || ||||| || ||||| |||||||| |||| ||||| || || ||||| ||| |
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| T |
6773416 |
agaccaacacttccttcaattgagcttttggatcgcgttgcggaccggctttctaaagagaaagcatgggatcaagcagtttttaatgaagaactttttt |
6773317 |
T |
|
| Q |
187 |
atccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacag |
259 |
Q |
| |
|
| || ||||||||||||||||| || ||||||||||| || ||||| |||||||| || |||||||||||||| |
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|
| T |
6773316 |
acccttcacatcctggttatgatggacttcatgctgcaaagagaacaatggatatgtacctttttatgaacag |
6773244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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