View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7525_high_9 (Length: 255)
Name: NF7525_high_9
Description: NF7525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7525_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 17755393 - 17755456
Alignment:
| Q |
181 |
aaagttagaattgctaccctaaaaaagttagaattgcttattgaattttcattttcatcatatt |
244 |
Q |
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| T |
17755393 |
aaagttaaaattgctaccctaaaaaagttagaattgcttactgaattttcattttcatcatatt |
17755456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 17764380 - 17764443
Alignment:
| Q |
181 |
aaagttagaattgctaccctaaaaaagttagaattgcttattgaattttcattttcatcatatt |
244 |
Q |
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| T |
17764380 |
aaagttaaaattgctaccctaaaaaagttagaattgcttactgaattttcattttcatcatatt |
17764443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 17755241 - 17755298
Alignment:
| Q |
20 |
ttgatctcacttgagaaaaatgagttggcgtaaaaacttgagtaaaccttcagtaaat |
77 |
Q |
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| T |
17755241 |
ttgatctcacttgagaaaaatgagttggcgtaaaaacttgagtaaaccttcaataaat |
17755298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 17764228 - 17764285
Alignment:
| Q |
20 |
ttgatctcacttgagaaaaatgagttggcgtaaaaacttgagtaaaccttcagtaaat |
77 |
Q |
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| T |
17764228 |
ttgatctcacttgagaaaaatgagttggcgtaaaaacttgagtaaaccttcaataaat |
17764285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 17755317 - 17755348
Alignment:
| Q |
136 |
tcttgccattgcattatgttgccgctccctgc |
167 |
Q |
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| T |
17755317 |
tcttgccattgcattatgttgccgctccctgc |
17755348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 17764304 - 17764335
Alignment:
| Q |
136 |
tcttgccattgcattatgttgccgctccctgc |
167 |
Q |
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| T |
17764304 |
tcttgccattgcattatgttgccgctccctgc |
17764335 |
T |
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