View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7525_low_10 (Length: 255)

Name: NF7525_low_10
Description: NF7525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7525_low_10
NF7525_low_10
[»] chr8 (6 HSPs)
chr8 (181-244)||(17755393-17755456)
chr8 (181-244)||(17764380-17764443)
chr8 (20-77)||(17755241-17755298)
chr8 (20-77)||(17764228-17764285)
chr8 (136-167)||(17755317-17755348)
chr8 (136-167)||(17764304-17764335)


Alignment Details
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 17755393 - 17755456
Alignment:
Q  181 aaagttagaattgctaccctaaaaaagttagaattgcttattgaattttcattttcatcatatt 244  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17755393 aaagttaaaattgctaccctaaaaaagttagaattgcttactgaattttcattttcatcatatt 17755456  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 17764380 - 17764443
Alignment:
Q  181 aaagttagaattgctaccctaaaaaagttagaattgcttattgaattttcattttcatcatatt 244  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17764380 aaagttaaaattgctaccctaaaaaagttagaattgcttactgaattttcattttcatcatatt 17764443  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 17755241 - 17755298
Alignment:
Q  20 ttgatctcacttgagaaaaatgagttggcgtaaaaacttgagtaaaccttcagtaaat 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17755241 ttgatctcacttgagaaaaatgagttggcgtaaaaacttgagtaaaccttcaataaat 17755298  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 17764228 - 17764285
Alignment:
Q  20 ttgatctcacttgagaaaaatgagttggcgtaaaaacttgagtaaaccttcagtaaat 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17764228 ttgatctcacttgagaaaaatgagttggcgtaaaaacttgagtaaaccttcaataaat 17764285  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 17755317 - 17755348
Alignment:
Q  136 tcttgccattgcattatgttgccgctccctgc 167  Q
    ||||||||||||||||||||||||||||||||    
T  17755317 tcttgccattgcattatgttgccgctccctgc 17755348  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 17764304 - 17764335
Alignment:
Q  136 tcttgccattgcattatgttgccgctccctgc 167  Q
    ||||||||||||||||||||||||||||||||    
T  17764304 tcttgccattgcattatgttgccgctccctgc 17764335  T

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