View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7525_low_2 (Length: 686)
Name: NF7525_low_2
Description: NF7525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7525_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 324 - 673
Target Start/End: Complemental strand, 1832633 - 1832284
Alignment:
| Q |
324 |
tatggattactgccggaaaacttaagtgaaatgaaaaggggtaaaattgtattttccaatgataaaattgctactgtgtggtcactcttacactaggctt |
423 |
Q |
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| T |
1832633 |
tatggattactgccggaaaacttaagtgaaatgaaaaggggtaaaattgtattttccaatgataaaattgctactgtgtggtcactcttacactaggctt |
1832534 |
T |
|
| Q |
424 |
ggatagtatttaacttatacatcaggtacttgagtgtctatcacaatcgtctatattaattaatattatatcaaaggtcagatttcaactggtccaagtt |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1832533 |
ggatagtatttaacttatacatcaggtacttgagtgtctatcacaatcgtctatattaattaatattatatcaaaggtcagatttcaactggtccaagtt |
1832434 |
T |
|
| Q |
524 |
ggacctcaactttcaccggtccaaattaaaagaaacctacaaccaaagagaagaagttgtacatccaatttaagaagggttaaacttcaaaatttaggta |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1832433 |
ggacctcaactttcaccggtccaaattaaaagaaacctacaaccaaagagaagaagttgtacatccaatttaagaagggttaaacttcaaaatttaggta |
1832334 |
T |
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| Q |
624 |
aagaaatcatagatgaaataagaagaaatttatctattttccattggttc |
673 |
Q |
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| T |
1832333 |
aagaaatcatagatgaaataagaagaaatttatctattttccattggttc |
1832284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 324 - 673
Target Start/End: Complemental strand, 1867076 - 1866727
Alignment:
| Q |
324 |
tatggattactgccggaaaacttaagtgaaatgaaaaggggtaaaattgtattttccaatgataaaattgctactgtgtggtcactcttacactaggctt |
423 |
Q |
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| T |
1867076 |
tatggattactgccggaaaacttaagtgaaatgaaaaggggtaaaattgtattttccaatgataaaattgctactgtgtggtcactcttacactaggctt |
1866977 |
T |
|
| Q |
424 |
ggatagtatttaacttatacatcaggtacttgagtgtctatcacaatcgtctatattaattaatattatatcaaaggtcagatttcaactggtccaagtt |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866976 |
ggatagtatttaacttatacatcaggtacttgagtgtctatcacaatcgtctatattaattaatattatatcaaaggtcagatttcaactggtccaagtt |
1866877 |
T |
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| Q |
524 |
ggacctcaactttcaccggtccaaattaaaagaaacctacaaccaaagagaagaagttgtacatccaatttaagaagggttaaacttcaaaatttaggta |
623 |
Q |
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| T |
1866876 |
ggacctcaactttcaccggtccaaattaaaagaaacctacaaccaaagagaagaagttgtacatccaatttaagaagggttaaacttcaaaatttaggta |
1866777 |
T |
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| Q |
624 |
aagaaatcatagatgaaataagaagaaatttatctattttccattggttc |
673 |
Q |
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| T |
1866776 |
aagaaatcatagatgaaataagaagaaatttatctattttccattggttc |
1866727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 1832922 - 1832729
Alignment:
| Q |
18 |
gattatgtagattttgttttcttgtttattttctggaaatctatttctgttagatatgttagtgtaaaagtggattttggagatgaaagagaattgaaaa |
117 |
Q |
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| T |
1832922 |
gattatgtagattttgttttcttgtttattttctggaaatctatttctgttagatatgttagtgtaaaagtggattttggagatgaaagagaattgaaaa |
1832823 |
T |
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| Q |
118 |
gagaagagtaaaagggtttctgagatgaactttgtgatgttattcttgttcaatatttgaaatttgaggttgttgttgttggagtgtatagttt |
211 |
Q |
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| T |
1832822 |
gagaagagtaaaagggtttctgagatgaactttgtgatgttattcttgttcaatatttgaaatttgaggttgttgttgttggagtgtatagttt |
1832729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 1867365 - 1867172
Alignment:
| Q |
18 |
gattatgtagattttgttttcttgtttattttctggaaatctatttctgttagatatgttagtgtaaaagtggattttggagatgaaagagaattgaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1867365 |
gattatgtagattttgttttcttgtttattttctggaaatctatttctgttagatatgttagtgtaaaagtggattttggagatgaaagagaattgaaaa |
1867266 |
T |
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| Q |
118 |
gagaagagtaaaagggtttctgagatgaactttgtgatgttattcttgttcaatatttgaaatttgaggttgttgttgttggagtgtatagttt |
211 |
Q |
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| T |
1867265 |
gagaagagtaaaagggtttctgagatgaactttgtgatgttattcttgttcaatatttgaaatttgaggttgttgttgttggagtgtatagttt |
1867172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 1832710 - 1832678
Alignment:
| Q |
230 |
taaacagagattgaaaattggttgcatttggga |
262 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
1832710 |
taaacagagattgaaaattggttgcatttggga |
1832678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 1867153 - 1867121
Alignment:
| Q |
230 |
taaacagagattgaaaattggttgcatttggga |
262 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
1867153 |
taaacagagattgaaaattggttgcatttggga |
1867121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 475 - 541
Target Start/End: Original strand, 35534251 - 35534317
Alignment:
| Q |
475 |
tatattaattaatattatatcaaaggtcagatttcaactggtccaagttggacctcaactttcaccg |
541 |
Q |
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||||||||||| || |||||||||||||||| || |||| |||||||||| |||||||||||||||| |
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| T |
35534251 |
tatattaattattaatatatcaaaggtcagactttaactagtccaagttgaacctcaactttcaccg |
35534317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 8518215 - 8518173
Alignment:
| Q |
92 |
ttttggagatgaaagagaattgaaaagagaagagtaaaagggt |
134 |
Q |
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||||||||||| |||||||||||| ||||||| |||||||||| |
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| T |
8518215 |
ttttggagatggaagagaattgaagagagaagggtaaaagggt |
8518173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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