View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7525_low_4 (Length: 455)
Name: NF7525_low_4
Description: NF7525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7525_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 42811309 - 42810893
Alignment:
| Q |
16 |
acatcagtaaaagaatcactagccattcattccaaaagaaacaatgtttacgagacaaaaacaaggactctattgatctattttattgcctatgccatta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42811309 |
acatcagtaaaagaatcactagccattcattccaaaagaaacaatgtttacgagacaaaaacaaggactctattgatctattctattgcctatgccatta |
42811210 |
T |
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| Q |
116 |
ccaggatagatcaatcggtggaaattatttgacaattcacaaacgaaatctaataaattttgacactttcttaagccctctttgaagtaaagtaataaat |
215 |
Q |
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| T |
42811209 |
ccaggatagatcaatcggtggaaattatttgacaattcacaaacgaaatctaataaattttgacactttcttaagccctctttgaagtaaagtaataaat |
42811110 |
T |
|
| Q |
216 |
tttggcacttcagaaatgaaatctacaatcgcatacacattagcaactaaactagcaagctagggttacgaaattccatacacgtgaatgaaaggggatt |
315 |
Q |
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| T |
42811109 |
tttggcacttcagaaatgaaatctacaatcgcatacacattagcaactaaactagcaagctagggttacgaaattccatacacgtgaatgaaaggggatt |
42811010 |
T |
|
| Q |
316 |
tcacataaaacttataacagtaaattcaatagaaatggaagatcgataaaatgagattgaaagaaagggggaatgtaccggattggaagaaatggcggtg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42811009 |
tcacataaaacttataacagtaaattcaatagaaatggaagatcgataaaatgagattgaaagaaagggggaatgtaccggattggaagaaatggcggtg |
42810910 |
T |
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| Q |
416 |
gaagtgaaggtgccgcg |
432 |
Q |
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| T |
42810909 |
gaagtgaaggtgccgcg |
42810893 |
T |
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