View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7525_low_5 (Length: 397)

Name: NF7525_low_5
Description: NF7525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7525_low_5
NF7525_low_5
[»] chr4 (3 HSPs)
chr4 (1-368)||(42040544-42040914)
chr4 (4-47)||(21474913-21474956)
chr4 (1-35)||(43139025-43139059)
[»] chr1 (4 HSPs)
chr1 (130-368)||(15776381-15776619)
chr1 (306-359)||(4199048-4199101)
chr1 (1-45)||(15776622-15776666)
chr1 (3-31)||(2094300-2094328)
[»] chr5 (6 HSPs)
chr5 (141-333)||(875363-875553)
chr5 (257-309)||(877129-877181)
chr5 (194-230)||(868082-868118)
chr5 (195-266)||(871952-872023)
chr5 (217-266)||(877066-877116)
chr5 (3-47)||(9942285-9942329)
[»] chr8 (1 HSPs)
chr8 (1-35)||(9512344-9512378)
[»] chr2 (1 HSPs)
chr2 (3-35)||(186761-186793)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 42040544 - 42040914
Alignment:
Q  1 cagcgtgagttaactcacgctggttttgttttcacatattcaaaatggttttgcattcattacatgcaaaagttgtctctcaccgctttactttaatcac 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  42040544 cagcgtgagttaactgacgctggttttgttttcacatattcaacatggttttgcatttattacatccaaaagttgtctcccaccgctttactttaatcac 42040643  T
Q  101 cccatgattatattaatttaaaactcatggcaatacttatccatggataaaagatagattcaacaaactgaaaattttgtcattctttaatacgtgttgc 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||| |||||||||||    
T  42040644 cccatgattatattaatttaaagctcatggcaatacttatccatggatgaaagatagatttaacaaacttaaaattttgtcattttttcatacgtgttgc 42040743  T
Q  201 ---agccttgttttgttttagttttaatggttgagaagtgacacggattgggaatggtttggtttgttgggtattgaattgaatgagacagtgatgatgt 297  Q
       ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42040744 tgtagccttgttttgttttagttttaatggttgagaagtgacacggatcgggaatggtttggtttgttgggtattgaattgaatgagacagtcatgatgt 42040843  T
Q  298 atggatggttctagcaaggcatttctatcatgttgatgcatcaaaagagcacgcttttgaaatttaaaaac 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42040844 atggatggttctagcaaggcatttctatcatgttgatgcatcaaaagagcatgcttttgaaatttaaaaac 42040914  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 21474913 - 21474956
Alignment:
Q  4 cgtgagttaactcacgctggttttgttttcacatattcaaaatg 47  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||    
T  21474913 cgtgagctaactcacgctggttttgttttcatatattcacaatg 21474956  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43139025 - 43139059
Alignment:
Q  1 cagcgtgagttaactcacgctggttttgttttcac 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  43139025 cagcgtgacttaactcacgctggttttgttttcac 43139059  T

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Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 130 - 368
Target Start/End: Complemental strand, 15776619 - 15776381
Alignment:
Q  130 gcaatacttatccatggataaaagatagattcaacaaactgaaaattttgtcattctttaatacgtgttgcagccttgttttgttttagttttaatggtt 229  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15776619 gcaatacttatccatgaataaaagatagattcaacaaactaaaaattttgtcattctttaatacgtgttgcagccttgttttgttttagttttaatggtt 15776520  T
Q  230 gagaagtgacacggattgggaatggtttggtttgttgggtattgaattgaatgagacagtgatgatgtatggatggttctagcaaggcatttctatcatg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15776519 gagaagtgacacggattgggaatggtttggtttgttgggtattgaattgaatgagacagtgatgatgtatggatggttctagcaaggcatttctatcatg 15776420  T
Q  330 ttgatgcatcaaaagagcacgcttttgaaatttaaaaac 368  Q
    || |||||||||||||||| |||||||||||||||||||    
T  15776419 tttatgcatcaaaagagcatgcttttgaaatttaaaaac 15776381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 4199048 - 4199101
Alignment:
Q  306 ttctagcaaggcatttctatcatgttgatgcatcaaaagagcacgcttttgaaa 359  Q
    |||| |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  4199048 ttctcgcaaggtatttctatcatgttgatgcatcaaaagagcatgcttttgaaa 4199101  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15776666 - 15776622
Alignment:
Q  1 cagcgtgagttaactcacgctggttttgttttcacatattcaaaa 45  Q
    ||||||||||||||||| ||||  |||||||||||||||||||||    
T  15776666 cagcgtgagttaactcaggctgagtttgttttcacatattcaaaa 15776622  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 2094328 - 2094300
Alignment:
Q  3 gcgtgagttaactcacgctggttttgttt 31  Q
    |||||||||||||||||||||||||||||    
T  2094328 gcgtgagttaactcacgctggttttgttt 2094300  T

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Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 141 - 333
Target Start/End: Original strand, 875363 - 875553
Alignment:
Q  141 ccatggataaaagatagattcaacaaactgaaaattttgtcattctttaatac---gtgttgcagccttgttttgttttagttttaatggttgagaagtg 237  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||  |    
T  875363 ccatgaataaaagatagattcaacaaactgaaatttttgtcattctttaatacaaagtgttgcagccttgtttagttttagttttaatggttgagaacgg 875462  T
Q  238 acacggattgggaatggtttggtttgttgggtattgaattgaatgagacagtgatgatgtatggatggttctagcaaggcatttctatcatgttga 333  Q
    |||| ||||||||||||||| |||| ||||||     |||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  875463 acaccgattgggaatggtttcgttttttgggt-----attgaatgaggcagtgatgatgtatggatggttctggcaaggcgtttctatcatgttga 875553  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 877129 - 877181
Alignment:
Q  257 tggtttgttgggtattgaattgaatgagacagtgatgatgtatggatggttct 309  Q
    |||| ||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  877129 tggtgtgtcgggtattgaattgaatgagacagtgatgatggatggatggttct 877181  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 868082 - 868118
Alignment:
Q  194 gtgttgcagccttgttttgttttagttttaatggttg 230  Q
    |||||||| ||||||||||||||||||||||||||||    
T  868082 gtgttgcaaccttgttttgttttagttttaatggttg 868118  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 871952 - 872023
Alignment:
Q  195 tgttgcagccttgttttgttttagttttaatggttgagaagtgacacggattgggaatggtttggtttgttg 266  Q
    ||||||| |||||||||| | || |||| ||||||| |||  ||||| |||||||||||||| |||||||||    
T  871952 tgttgcaaccttgttttgctataattttcatggttgcgaaccgacacagattgggaatggttcggtttgttg 872023  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 877066 - 877116
Alignment:
Q  217 agttttaatggttgagaagtgacacggattggg-aatggtttggtttgttg 266  Q
    |||||||||||||||||| |||||| ||||||| ||||||| |||||||||    
T  877066 agttttaatggttgagaactgacacagattgggaaatggttcggtttgttg 877116  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 9942285 - 9942329
Alignment:
Q  3 gcgtgagttaactcacgctggttttgttttcacatattcaaaatg 47  Q
    ||||||||||||||| |||| ||||||||| ||||||||| ||||    
T  9942285 gcgtgagttaactcatgctgattttgttttgacatattcacaatg 9942329  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9512378 - 9512344
Alignment:
Q  1 cagcgtgagttaactcacgctggttttgttttcac 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  9512378 cagcgtgacttaactcacgctggttttgttttcac 9512344  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 186761 - 186793
Alignment:
Q  3 gcgtgagttaactcacgctggttttgttttcac 35  Q
    ||||||||||||||||||| |||||||||||||    
T  186761 gcgtgagttaactcacgctagttttgttttcac 186793  T

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