View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7526_high_3 (Length: 232)
Name: NF7526_high_3
Description: NF7526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7526_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 42045310 - 42045501
Alignment:
| Q |
21 |
atgatgtggcacatttaggaaagcttctcattctctaaataataaataaatttcacttgtaaatttcatctttgatatatctcattaatcctccactaaa |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42045310 |
atgatgtggcacatctaggaaagcttctcattctctaaataataaataaatttcacttgtaaatttcatctttgatatatctcattaatcctccactaaa |
42045409 |
T |
|
| Q |
121 |
tcataatgttgtgtgaattnnnnnnnnttaactcttttctcattctattattattagtgccatagaaagttgtcatgtataaatgcaactatta |
214 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42045410 |
tcataatgttgtgtgaatt-aaaaaatttaactc-tttctcattctattattattagtgccatagaaagttgtcatgtataaatgcaactatta |
42045501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 27778668 - 27778619
Alignment:
| Q |
90 |
ctttgatatatctcattaatcctccactaaatcataatgttgtgtgaatt |
139 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27778668 |
ctttcatatatctcattaatcctccactaaataataatgttgtgtgaatt |
27778619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 25989540 - 25989584
Alignment:
| Q |
90 |
ctttgatatatctcattaatcctccactaaatcataatgttgtgt |
134 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||||||||||| |
|
|
| T |
25989540 |
ctttgacatgtctcattaatcctccactgaatcataatgttgtgt |
25989584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 25989638 - 25989682
Alignment:
| Q |
156 |
tttctcattctattattattagtgccatagaaagttgtcatgtat |
200 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
25989638 |
tttcttattctattattattagtgcgatagaaagttgtcttgtat |
25989682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University