View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7526_low_1 (Length: 479)
Name: NF7526_low_1
Description: NF7526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7526_low_1 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 1249118 - 1249558
Alignment:
| Q |
18 |
catttaaccggtcaggttccggcttacctcggccaccttcctaagcttgtaggcctagatgtaagccacaaccagctttgtggtcctataccaaaggatg |
117 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1249118 |
catttaaccggtcgggttccggcttacctcggccgccttcctaagcttgtaggcctagatgtgagccacaaccagctttgtggtcctataccaaaggatg |
1249217 |
T |
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| Q |
118 |
gagggaagttgcaagggtttgatccgtcgtggtttgagaataataagtgtttatgtggtgctcccttggccccttgcaaggcctagttaactaaagggat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1249218 |
gagggaagttgcaagggtttgatccgtcgtggtttgagaataataagtgtttatgtggtgctcccttggccccttgcaagacctagttaactaaagggat |
1249317 |
T |
|
| Q |
218 |
gcatgcttaataaatggacttcatgtattattgtgctcttgtttatgcatggagttaagagaaatgcaatctaattataattagtatggatagtctacat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1249318 |
gcatgcttaataaatggacttcatgtattattgtgctcttgtttatgcatggagttaagagaaatgcaatctaattataattagtatggatagtct--at |
1249415 |
T |
|
| Q |
318 |
gttttaagtacgttctcatcttcttaagtattattacatgcgtgaatgaaactgcttgatcagtccataaccaatagcaattattatttcagaactgcta |
417 |
Q |
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| T |
1249416 |
gttttaagtacgttctcatcttcttaagtattattacatgcgtgaatgaaacttcttgatcagtccataaccaatagcatttattatttcagaactgcta |
1249515 |
T |
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| Q |
418 |
tatatcacgattaaatacttcacgaataaatcatgaatcacat |
460 |
Q |
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| T |
1249516 |
tatatcacgattaaatactttacgaataaatcatgaatcacat |
1249558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 12079078 - 12078961
Alignment:
| Q |
76 |
atgtaagccacaaccagctttgtggtcctataccaaaggatggagggaagttgcaagggtttgatccgtcgtggtttgagaataataagtgtttatgtgg |
175 |
Q |
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|||| ||| ||||||| ||||||||||||||||| | | |||||||||||||||||||||||||| |||| |||| | ||||||||||||| ||||| |
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| T |
12079078 |
atgtgagcaacaaccaactttgtggtcctataccgacagtcggagggaagttgcaagggtttgatccatcgtcgttttcgcataataagtgtttgtgtgg |
12078979 |
T |
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| Q |
176 |
tgctcccttggccccttg |
193 |
Q |
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| T |
12078978 |
ttctcctttgcccccttg |
12078961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 12095718 - 12095613
Alignment:
| Q |
76 |
atgtaagccacaaccagctttgtggtcctataccaaaggatggagggaagttgcaagggtttgatccgtcgtggtttgagaataataagtgtttatgtgg |
175 |
Q |
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|||| ||| |||||||||||| ||||||||||| | | ||||||||||||||||| ||||||||| |||| |||| | |||||||| | || ||||| |
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| T |
12095718 |
atgtgagctacaaccagcttttcggtcctataccgacagttggagggaagttgcaagagtttgatccatcgtcgttttcgcataataagggcttgtgtgg |
12095619 |
T |
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| Q |
176 |
tgctcc |
181 |
Q |
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| |||| |
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| T |
12095618 |
ttctcc |
12095613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 413 - 460
Target Start/End: Original strand, 18421 - 18468
Alignment:
| Q |
413 |
tgctatatatcacgattaaatacttcacgaataaatcatgaatcacat |
460 |
Q |
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| T |
18421 |
tgctatataccacgattaaatacttcaagaataaatcacgaatcacat |
18468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 413 - 460
Target Start/End: Original strand, 14959178 - 14959225
Alignment:
| Q |
413 |
tgctatatatcacgattaaatacttcacgaataaatcatgaatcacat |
460 |
Q |
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| T |
14959178 |
tgctatataccacgattaaatacttcaagaataaatcacgaatcacat |
14959225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 413 - 460
Target Start/End: Original strand, 39491083 - 39491130
Alignment:
| Q |
413 |
tgctatatatcacgattaaatacttcacgaataaatcatgaatcacat |
460 |
Q |
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| T |
39491083 |
tgctatataccacgattaaatacttcaagaataaatcacgaatcacat |
39491130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 460
Target Start/End: Original strand, 2224047 - 2224094
Alignment:
| Q |
413 |
tgctatatatcacgattaaatacttcacgaataaatcatgaatcacat |
460 |
Q |
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| T |
2224047 |
tgctatataccacgattaaatatttcaagaataaatcacgaatcacat |
2224094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 460
Target Start/End: Complemental strand, 27585594 - 27585547
Alignment:
| Q |
413 |
tgctatatatcacgattaaatacttcacgaataaatcatgaatcacat |
460 |
Q |
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||||||||| ||| ||||||||||||| |||||||||| ||||||||| |
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| T |
27585594 |
tgctatataccacaattaaatacttcaagaataaatcacgaatcacat |
27585547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 460
Target Start/End: Original strand, 35181763 - 35181812
Alignment:
| Q |
411 |
actgctatatatcacgattaaatacttcacgaataaatcatgaatcacat |
460 |
Q |
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| T |
35181763 |
actgctatatatcacgattaaaaactttaagaataaatcacgaattacat |
35181812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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