View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7526_low_2 (Length: 369)
Name: NF7526_low_2
Description: NF7526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7526_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 2 - 360
Target Start/End: Original strand, 42045609 - 42045965
Alignment:
| Q |
2 |
aaattcgtgagctcctctaataaacttatacggcacatttgataattaaagaagcaaaaaagcattaaatgtgggggaaacaaggagaagccacagtttt |
101 |
Q |
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| T |
42045609 |
aaattcgtgagcttctctaataaacttatacggcacatttgataa----agaagcaaaaaaccattaaatgtgggggaaacaaggagaagccacagtttt |
42045704 |
T |
|
| Q |
102 |
attgcatcaaggaacgaaggcaaactacaaaacacacaaattattgatgagcagaaaacaaacttgaacaaaca--aattattatggatttaaacgttca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
42045705 |
attgcatcaaggaacgaaggcaaactacaaaacacacaaattattgatgagcagaaaacaaacttaaacaaacacaaattattatggatttaaacgttca |
42045804 |
T |
|
| Q |
200 |
tttttgtttttgttcatgatcttagcatgatggtcatagccagtgaagcccgtgattgattaattctttagaggtatcatgctaccaagagatttccaat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42045805 |
tttttgtttttgttcatgatcttagcatgatggtcatagccagtgaagcccatgattgattaattctttagaggtatcatgctaccaagagatttccaat |
42045904 |
T |
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| Q |
300 |
tgtcaatgattcgtaccacaccaccaataaggttgttttttggtacgcctgggttaacacc |
360 |
Q |
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|||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
42045905 |
tgtcaatgattcgtgccacaccaccgataaggttgtcttttggtacgcctgggttaacacc |
42045965 |
T |
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