View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7527_high_3 (Length: 463)
Name: NF7527_high_3
Description: NF7527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7527_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 13 - 445
Target Start/End: Complemental strand, 36504063 - 36503631
Alignment:
| Q |
13 |
aatataatgtcaccatccaacaaggaaagagtcgcatagaaaaaccaaccaccaatcaaacccattgttagacccactccccctaactatatagatattt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36504063 |
aatataatgtcaccatccaacaaggaaagagtcgcatagaaaaaccaaccaccaatcaaacccattgttagacccactccccctaactatatagatattt |
36503964 |
T |
|
| Q |
113 |
tcccaactgggaagttgttatcacataaaatagaaacaactatatgaaatatctacaaggacattctcttcttcaaagagttcaatccatatacaatcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36503963 |
tcccaactgggaagttgttatcacataaaatagaaacaactatatgaaatatctacaagggcattctcttcttcaaagagttcaatccatatacaatcat |
36503864 |
T |
|
| Q |
213 |
aatcgttagatgattaattgtgttcgaatttaatcataattgtttttaaagacatacatgtgattggttgttatttgatcgacagtgtaaaacaactatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36503863 |
aatcgttagatgattaattgtgttcgaatttaatcataattgtttttaaagacatacatgtgattggttgttatttgatcgacagtgtaaaacaactatt |
36503764 |
T |
|
| Q |
313 |
gttgggtcaagagggatttgaggatcgtcacattaaagtttgagcaataacataaatgagttgtacaacgtatatctccactttgttgtaaaaagctaag |
412 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36503763 |
gttgggtcaagggggatttgaggatcgtcacattaaagtttgagcaataacataaatgagttgtacaacgtatatctcctctttgttgtaaaaagctaag |
36503664 |
T |
|
| Q |
413 |
tacgactttgacaattctattggatctcatccc |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36503663 |
tacgactttgacaattctattggatctcatccc |
36503631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University