View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7527_high_5 (Length: 282)
Name: NF7527_high_5
Description: NF7527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7527_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 267
Target Start/End: Complemental strand, 31743785 - 31743527
Alignment:
| Q |
9 |
tggtgttgagttttaatgtgtagtttgaagtactattattgatagggttgtttctgtttgcaacccaaacaacattttgaactggaatgtttttatacca |
108 |
Q |
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| T |
31743785 |
tggtgttgagttttaatgtgtagtttgaagtactattattgatagggttgtttctgtttgcaacccaaacaacattttgaactggaatgtttttatacca |
31743686 |
T |
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| Q |
109 |
aataccaaggtatgttttgctagagttacctggagtgaagaaaccaagttcaaatcttccattttgggacaccaaggtattattattgctgatggattgt |
208 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31743685 |
aataccaaggtaagttttgctagagttacctggagtgaagaaaccaagttcaaatcttccattttgggacaccaaggtattattattgctgatggattgt |
31743586 |
T |
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| Q |
209 |
gacaaaccaagagaatcagctgctatggaatgtttgagagtgttaacaagtatataggt |
267 |
Q |
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| T |
31743585 |
gacaaaccaagagaatcagctgctatggaatgtttgagagtgttaacaagtatataggt |
31743527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 31738546 - 31738291
Alignment:
| Q |
12 |
tgttgagttttaatgtgtagtttgaagt---actattattgatagggttgtttctgtttgcaacccaaacaacattttgaactggaatgtttttatacca |
108 |
Q |
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|||||||||||||| ||||||||||| | | || ||||||| || ||||||||||||||||||||||||| ||||||||| || |||||||| ||||| |
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| T |
31738546 |
tgttgagttttaatatgtagtttgaatttaaagtactattgatgggattgtttctgtttgcaacccaaacaaaattttgaacaggtatgtttttgtacca |
31738447 |
T |
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| Q |
109 |
aataccaaggtatgttttgctagagttacctggagtgaagaaaccaagttcaaatcttccattttgggacaccaaggtattattattgctgatggattgt |
208 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31738446 |
aataccaaggtaagttttgttagagttacctggagtgaagaaaccaagttcatatcttccattttgggacaccaaggtat---tattgctgatggattgt |
31738350 |
T |
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| Q |
209 |
gacaaaccaagagaatcagctgctatggaatgtttgagagtgttaacaagtatataggt |
267 |
Q |
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| T |
31738349 |
gacaaaccaagagaatcagttgctatggaaagtttgagagagttaacaagtatataggt |
31738291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 45 - 266
Target Start/End: Complemental strand, 31730854 - 31730630
Alignment:
| Q |
45 |
tattgatagggttgtttctgtttgcaacccaaacaacattttgaactggaatgtttttataccaaataccaaggtatgttttgctagagttacctggagt |
144 |
Q |
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||||||| || ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||||||||| |
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| T |
31730854 |
tattgatgggattgtttctgtttgcaacccaaacaaatttttgaacaggaatgtttttgtaccaaataccaaggtaagttttgttagagttacctggagt |
31730755 |
T |
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| Q |
145 |
gaagaaaccaagttcaaatcttccattttgggacaccaaggtattat---tattgctgatggattgtgacaaaccaagagaatcagctgctatggaatgt |
241 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31730754 |
gaagaaaccaagttcatatcttccattttgggacaccaaggtattattattattgctgatggattgtgacaaaccaagagaatcagctgctatggaaagt |
31730655 |
T |
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| Q |
242 |
ttgagagtgttaacaagtatatagg |
266 |
Q |
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|||| || || | |||||| ||||| |
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| T |
31730654 |
ttgaaagagtgagcaagtaaatagg |
31730630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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