View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7527_low_4 (Length: 392)
Name: NF7527_low_4
Description: NF7527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7527_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 373
Target Start/End: Original strand, 45103247 - 45103612
Alignment:
| Q |
13 |
ggacatcaagtcacctgacccacattgtatacgggccacatattgggccgacctaatgtttggcaatacggtccacaattacaataattgnnnnnnnnnn |
112 |
Q |
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| T |
45103247 |
ggacctcaagtcacctgacccacattgtatacgggccacatattggggcgacctaatgtttggcaatacggtccacaattacaataattgtttttttttt |
45103346 |
T |
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| Q |
113 |
nnnn-gttgacaaattattacaataattgttgtaaaattaaataaaaatgtccattatagtacattgcatttatatatatcagttgaaagtaattaatat |
211 |
Q |
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| T |
45103347 |
tttttgttgacaaattattacaataattgttgtaaaattaaataaaaatgtccattatagtacattgcatttatatatatcagtcgaaagtaattaatat |
45103446 |
T |
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| Q |
212 |
tggatcgtatttcacgattctttgtctgttctttcttctcccttatccccccttagcttcattcatccagtgaagtcgacacatc-----acagaacaga |
306 |
Q |
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| T |
45103447 |
tggatcgtatttcacgattctttgtctgttctttcttctcccttat-cccccttagcttcattcatccagtgaagtcgacacatcacagaacagaacaga |
45103545 |
T |
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| Q |
307 |
acacattttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagcta |
373 |
Q |
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| T |
45103546 |
acacattttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagcta |
45103612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 45130034 - 45130132
Alignment:
| Q |
121 |
acaaattattacaataattgttgtaaaattaaataaaaatgtccattatagtacattgcatttatatatatcagttgaaagtaattaatattggatcgt |
219 |
Q |
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| T |
45130034 |
acaagttatcacaataattgttgtaaaataaaataaaaatgtccattatgatacattgcatttatatatagcagtcgaaagtaattaatgttcgatcgt |
45130132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 45130219 - 45130271
Alignment:
| Q |
322 |
atggagcaaacatgggaaaattggcctcttcattcggtaataacactagctat |
374 |
Q |
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| T |
45130219 |
atggaggaatcatgggaacactggcctcttcattcggtaaaaatactagctat |
45130271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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